Solea senegalensis (Senegalese sole): 122783088
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Entry
122783088 CDS
T07721
Name
(RefSeq) SR-related and CTD-associated factor 8-like
KO
K13191
RNA-binding protein 16
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122783088
03041 Spliceosome [BR:
ssen03041
]
122783088
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122783088
Spliceosome [BR:
ssen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122783088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122783088
NCBI-ProteinID:
XP_043903672
LinkDB
All DBs
Position
LG16:complement(209474..230793)
Genome browser
AA seq
1457 aa
AA seq
DB search
MEEPSTGSTGYCSHNIDLKGSTAKASVHSVQQEMHRNRMQRTCWVHKLILHPTMIPFPLL
LFQFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPT
FQHLYRCPSDDKSKIVRVLNLWQKNAVFKSDIIQPLLDMAAGIAPPSVTPVMPSSAAPVN
NTTPGTPATPATPANLVQGLPDWASQINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQ
KPQPSLLQALDAGLVVQLQALTAQLTAAATANSLNPLEQRVSSFNKKLLGPFDFGNDNER
GEESKKDSSSSQLPMVSEPINSSLFHQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQ
DSMYGQENSVTAQSSSQPQLPEPENKMDDSIDNQQQDMDLDEGPDGMEEESFEAEEKKTA
SKRSRTRSRSHSRSPKRRRSRSRSGSRKRKHRKRSRSRSRDRKRKSSRSYSSERRARERE
KERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAY
ICMVHRQDAYRARQKLSTGSFKIGSKVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKV
KLDDLDGFAEGGIIDQETVNDEWEAAKNAEPVKEVASQPVSAETTAVSNTQTETYSQQVT
MMPVQLPVAQAVPSAVGLVPPNFPVTMSIPPPGYGPPPPFIRAGFNATQPPPGFMQAAQA
GTTSLVQPSLANSQEAVKESPFSAMIPPTSTIPGSFMPSAIPGAGVFNPVGVQPQQVGHE
KTAQSADGLDAAELTLQGMQNAVRSGMGLLGMHPSASLTHPLHQSALSGQRMPGLLPLDV
RPNLLQAGAAARFPLLMQHGPAAGLLDASLQAQARARAPFPQMDPFNRAPNLTNENVAKK
EEESSSGADEGKDQDYRFPPMEKQSTGLLRTPPPDHRDSLGGGAAGRPPLLQTPGAARSS
LVGRLQALAGFTPDNRWNQARGDFDERDGIRGGPQAPGGPKGFQEERPTPGQNFPNRFDS
RPGTAGAAGAPGNAGAAAGPQNWNRGGGGGGGGGGGGGAAAPAPFDSELHQDLDERRRPW
DRQRDRDERDFDFRREMNGNRHSRERERERERERERERDRDRGRDRSRDFERDRDRDKER
DRERERERGGWTPLLPLPTPLLPTPTLNPNLTLNQGKLLSPLKLNPQMQSRFQSPLLPQL
QGKPSLMGLNQPLPPVQIKTPPPSQSSAAAAPEPQSETAAPVSETPEAQSPPSTQSPEQS
PEQSPDQSPDNKSQSPVTEAPIQAQSSPSSSSSSPPQSETPPQSESQFQPTVQSPSKSVS
SPDTETPNQASPLVEASSQDSPVAFTLAPVSPREETTPSPEERESSPKNDDESEDSREFS
VQQQWLNGPGLDNSNVAEPTPEGSPESSPVPFSDSVRPESEPEQLASPKDVDNEQSEPAE
EAASQPVVDTVTDTEGT
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggaggagccctctacaggcagcacggggtactgcagccacaacatcgatctgaaaggc
tccaccgcgaaggcctcggtacactcggtccaacaggagatgcacaggaaccgcatgcaa
agaacgtgctgggtgcacaaactgattctccaccccaccatgattccctttcctttgctt
ctctttcagttctacaaacatgtcgtccagagtgtagagaagttcatacaaaagtgcaaa
ccagaatacaaggttccgggcttgtacgtcatcgactccattgtcaggcagtcacgacac
cagtttggcacagagaaggacgtatttgccccacgcttcagcaagaacatcatccctaca
ttccagcacctctaccgctgcccttcagatgataagagtaagattgtgcgagtcctcaac
ctatggcaaaagaatgccgtcttcaagagtgacatcatccaacccctgctggatatggca
gcagggatcgctccccccagtgtcacccccgtcatgccgagcagtgccgccccggtcaac
aacactacacctggtaccccagctactccggccactccagccaacttagtccagggtctg
cctgactgggcctcccagattaacaacacagacactgttgcagctgtagcgcagatcctg
caaagcccccagggacagcagttgcagcagctggtacagagtcttcagatgcagcagcag
aaaccccagccgtccctgctgcaggccttggatgccggcttagtggtgcagttgcaggct
ctgaccgcacagctcaccgctgctgccaccgccaacagcctcaaccccctggagcagagg
gtctcctcttttaataaaaagcttttgggtccttttgactttgggaacgataacgaacgt
ggcgaagaatctaagaaagacagttcatcatctcagttgccgatggtgtctgagcccatc
aacagctccctcttccaccagttagccgagcagctccaacaacagaacctggagcagttt
cagaagcagctgctcgagcaccaacagcaccagcagaaggctatgagcattgaagggcag
gactcgatgtatgggcaggaaaactctgtgactgctcagagcagcagccagccgcagctt
cctgagccagagaacaagatggacgactccatagataaccagcagcaggacatggacctg
gatgagggccctgatggaatggaggaggagagctttgaggctgaggaaaagaaaactgct
agcaaacgctccagaacacgctcaaggtcacactcgaggtctcccaagaggaggcggtcc
aggtcccgctccggctcacggaaacgcaagcaccgcaaacgctcgcgctcacgctccaga
gatcgcaagaggaagtcgtcgcgctcttactcgagcgagaggcgcgccagagagcgggag
aaggagcggcagaagaaaggcctgccccccataaggtccaagactctaagtgtgtgcagt
acgactctgtgggtgggccaggtggacaaaaaagccactcagcaagatcttaccaatctg
ttcgaagaatttggccagattgaatccatcaatatgatccctcccagaggctgtgcctac
atctgtatggtccacagacaggatgcgtaccgtgctcgccagaagctcagcaccggctcc
tttaagatcggctccaaagtcatcaagatcgcgtgggctctaaacaagggcgtaaaacag
gagtacaagcagttttgggacgtggacctgggtgttacctacataccttgggagaaggtg
aagctggatgatctggatggtttcgctgaaggaggaatcattgaccaggagactgtgaat
gatgagtgggaagcagccaagaatgctgagccagtgaaggaagtcgcaagtcagccagta
agcgcagagactacagctgtgtccaacactcagactgagacctacagccagcaggttacc
atgatgcctgtgcagctgccggtggcacaggctgttcccagtgcagtaggtttggtgccc
ccgaatttccccgtcaccatgagcatacctccgccaggctacgggccgccaccgcccttc
ataagagccggcttcaatgccacgcagcctccgccaggttttatgcaggcagcacaggcg
ggtactacttctctggtgcagccttcattggcgaacagccaggaagctgtcaaggaatcc
ccgtttagcgctatgatccctccgaccagcaccatccctggcagcttcatgccctcggcc
atccccggggctggtgtattcaacccagtgggagtccaacctcagcaagttggtcatgag
aaaacagctcagtctgcagatgggttggatgccgcagagctcacactgcaaggcatgcag
aacgcagtccgcagtgggatgggtcttcttggcatgcacccgtctgcttccctcacccac
ccgctacatcagtccgctctgagcgggcagagaatgcccggcctgttgcctctcgacgtg
cggcctaaccttcttcaggcaggggctgcagcccgcttccctctcctcatgcagcacggc
cctgctgctggcctcctcgacgcctccctccaggctcaggcacgtgcacgggctcctttc
cctcagatggaccccttcaaccgggccccgaatctcaccaatgagaacgtagccaagaaa
gaagaagagtcttcttctggggctgacgagggcaaagaccaggactatcgctttcccccg
atggaaaagcagagcacaggcctactgaggacccctccaccagatcacagggactccctc
ggaggtggagcagcaggccggccccctttgctccagactccgggggcagccaggtccagc
ctggtaggacgtctgcaagcgctcgcaggctttactcctgataatcgctggaaccaagcc
aggggggactttgacgagcgagatggtatccgaggtggcccgcaagctcctggtggtcca
aagggcttccaggaggagcgaccaacacctgggcagaattttcccaaccgctttgacagc
cgtcctgggacagcaggagctgctggggctcctggaaatgcaggagctgctgcggggcca
cagaactggaaccgaggaggcggcggcggaggtggtggcggcggtggtggtggtgctgct
gccccagcaccttttgacagtgaactacatcaagacctagacgagcgaagacgcccgtgg
gacaggcagagagacagagatgaaagagattttgacttcagaagggagatgaacgggaac
cgccacagccgcgagagggagagggagcgcgagagggagcgtgagagggaaagagacaga
gatcgaggcagagatcgcagcagggactttgaacgtgacagagaccgcgacaaagagaga
gaccgcgagagggaacgtgaacgtggtggttggacacctcttcttccactccccactccc
cttcttccaacgccgactctcaatcctaatctgaccctgaaccaaggcaaattactctca
ccacttaaattaaacccccagatgcagtcacgtttccagtctcccctcctgcctcagctt
cagggcaaaccttccctcatgggtttgaaccagcctctcccgccagttcagatcaagact
ccgcctccctcacagagctctgctgctgctgcacccgagccccagtcagaaaccgcagct
ccggtgtctgagacacctgaggcgcagtcgccaccctcgacccaatcacctgagcagtca
cctgagcagtcacctgaccaatcacctgataacaagagtcagagcccagtgactgaggct
cccatccaggcccagtcatcaccatcatcatcatcatcatcaccaccacagtcagagacc
cctcctcaatcagaatcacaattccagcccacagtccagtccccctccaaatccgtctcc
tctccagacactgagaccccaaaccaagcctcaccactggttgaggcgtcatcccaggac
tcacccgtggccttcacattagcccccgtcagcccccgcgaggagacgaccccctctccg
gaggagcgggaaagttcgccgaagaacgatgacgagtcggaagactccagagaattctcg
gtccaacagcagtggctcaacggacccgggctggacaatagcaatgtggctgagcccaca
ccagagggctcccccgagtcctccccagtccccttctctgattctgtgcgcccagaaagt
gaaccggagcagcttgcttcgcccaaggacgtagacaatgaacagagtgagcccgcggag
gaagctgcgagtcagccagtggtagacactgtcacagacactgaggggacataa
DBGET
integrated database retrieval system
