Solea senegalensis (Senegalese sole): 122783242
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Entry
122783242 CDS
T07721
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8
KO
K13191
RNA-binding protein 16
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122783242 (scaf8)
03041 Spliceosome [BR:
ssen03041
]
122783242 (scaf8)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122783242 (scaf8)
Spliceosome [BR:
ssen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122783242 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
122783242
NCBI-ProteinID:
XP_043903879
LinkDB
All DBs
Position
LG16:complement(19206477..19225797)
Genome browser
AA seq
1432 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSVTPVMPSSAAPVNNTTPGTPATPATPANLVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDNERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLLEHQQHQQKAMSIEGQDSMYGQENSVTAQSSSQPQLPEPEN
KMDDSIDNQQQDMDLDEGPDGMEEESFEAEEKKTASKRSRTRSRSHSRSPKRRRSRSRSG
SRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWV
GQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAYRARQKLSTGSFKIGS
KVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDGFAEGGIIDQETVNDEWEA
AKNAEPVKEVASQPVSAETTAVSNTQTETYSQQVTMMPVQLPVAQAVPSAVGLVPPNFPV
TMSIPPPGYGPPPPFIRAGFNATQPPPGFMQAAQAGTTSLVQPSLANSQEAVKESPFSAM
IPPTSTIPGSFMPSAIPGAGVFNPVGVQPQQVGHEKTAQSADGLDAAELTLQGMQNAVRS
GMGLLGMHPSASLTHPLHQSALSGQRMPGLLPLDVRPNLLQAGAAARFPLLMQHGPAAGL
LDASLQAQARARAPFPQMDPFNRAPNLTNENVAKKEEESSSGADEGKDQDYRFPPMEKQS
TGLLRTPPPDHRDSLGGGAAGRPPLLQTPGAARSSLVGRLQALAGFTPDNRWNQARGDFD
ERDGIRGGPQAPGGPKGFQEERPTPGQNFPNRFDSRPGTAGAAGAPGNAGAAAGPQNWNR
GGGGGGGGGGGGGAAAPAPFDSELHQDLDERRRPWDRQRDRDERDFDFRREMNGNRHSRE
RERERERERERERDRDRGRDRSRDFERDRDRDKERDRERERERGGWTPLLPLPTPLLPTP
TLNPNLTLNQGKLLSPLKLNPQMQSRFQSPLLPQLQGKPSLMGLNQPLPPVQIKTPPPSQ
SSAAAAPEPQSETAAPVSETPEAQSPPSTQSPEQSPEQSPDQSPDNKSQSPVTEAPIQAQ
SSPSSSSSSPPQSETPPQSESQFQPTVQSPSKSVSSPDTETPNQASPLVEASSQDSPVAF
TLAPVSPREETTPSPEERESSPKNDDESEDSREFSVQQQWLNGPGLDNSNVAEPTPEGSP
ESSPVPFSDSVRPESEPEQLASPKDVDNEQSEPAEEAASQPVVDTVTDTEGT
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggaggctgtcaaagcctttaacaacgagctgtactcgttgaacgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaagctataaaattctac
aaacatgtcgtccagagtgtagagaagttcatacaaaagtgcaaaccagaatacaaggtt
ccgggcttgtacgtcatcgactccattgtcaggcagtcacgacaccagtttggcacagag
aaggacgtatttgccccacgcttcagcaagaacatcatccctacattccagcacctctac
cgctgcccttcagatgataagagtaagattgtgcgagtcctcaacctatggcaaaagaat
gccgtcttcaagagtgacatcatccaacccctgctggatatggcagcagggatcgctccc
cccagtgtcacccccgtcatgccgagcagtgccgccccggtcaacaacactacacctggt
accccggctactccggccactccggccaacttagtccagggtctgcctgactgggcctcc
cagattaacaacacagacactgttgcagctgtggcgcagatcctgcaaagcccccaggga
cagcagttgcagcagctggtacagagtcttcagatgcagcagcagaaaccccagccgtcc
ctgctgcaggccttggatgccggcttagtggtgcagttgcaggctctgaccgcacagctc
accgctgctgccaccgccaacagcctcaaccccctggagcagagggtctcctcttttaat
aaaaagcttttgggtccttttgactttgggaacgataacgaacgtggcgaagaatctaag
aaagacagttcatcatctcagttgccgatggtgtctgagcccatcaacagctccctcttc
caccagttagccgagcagctccaacaacagaacctggagcagtttcagaagcagctgctc
gagcaccaacagcaccagcagaaggctatgagcattgaagggcaggactcgatgtatggg
caggaaaactctgtgactgctcagagcagcagccagccgcagcttcctgagccagagaac
aagatggacgactccatagataaccagcagcaggacatggacctggatgagggccctgat
ggaatggaggaggagagctttgaggctgaggaaaagaaaactgctagcaaacgctccaga
acacgctcaaggtcacactcgaggtctcccaagaggaggcggtccaggtcccgctccggc
tcacggaaacgcaagcaccgcaaacgctcgcgctcacgctccagagatcgcaagaggaag
tcgtcgcgctcttactcgagcgagaggcgcgccagagagcgggagaaggagcggcagaag
aaaggcctgccccccataaggtccaagactctaagtgtgtgcagtacgactctgtgggtg
ggccaggtggacaaaaaagccactcagcaagatcttaccaatctgttcgaagaatttggc
cagattgaatccatcaatatgatccctcccagaggctgtgcctacatctgtatggtccac
agacaggatgcgtaccgtgctcgccagaagctcagcaccggctcctttaagatcggctcc
aaagtcatcaagatcgcgtgggctctaaacaagggcgtaaaacaggagtacaagcagttt
tgggacgtggacctgggtgttacctacataccttgggagaaggtgaagctggatgatctg
gatggtttcgctgaaggaggaatcattgaccaggagactgtgaatgatgagtgggaagca
gccaagaatgctgagccagtgaaggaagtcgcaagtcagccagtaagcgcagagactaca
gctgtgtccaacactcagactgagacctacagccagcaggttaccatgatgcctgtgcag
ctgccggtggcacaggctgttcccagtgcagtaggtttggtgcccccgaatttccccgtc
accatgagcatacctccgccaggctacgggccgccaccgcccttcataagagccggcttc
aatgccacgcagcctccgccaggttttatgcaggcagcacaggcgggtactacttctctg
gtgcagccttcattggcgaacagccaggaagctgtcaaggaatccccgtttagcgctatg
atccctccgaccagcaccatccctggcagcttcatgccctcggccatccccggggctggt
gtattcaacccagtgggagtccaacctcagcaagttggtcatgagaaaacagctcagtct
gcagatgggttggatgccgcagagctcacactgcaaggcatgcagaacgcagtccgcagt
gggatgggtcttcttggcatgcacccgtctgcttccctcacccacccgctacatcagtcc
gctctgagcgggcagagaatgcccggcctgttgcctctcgacgtgcggcctaaccttctt
caggcaggggctgcagcccgcttccctctcctcatgcagcacggccctgctgctggcctc
ctcgacgcctccctccaggctcaggcacgtgcacgggctcctttccctcagatggacccc
ttcaaccgggccccgaatctcaccaatgagaacgtagccaagaaagaagaagagtcttct
tctggggctgacgagggcaaagaccaggactatcgctttcccccgatggaaaagcagagc
acaggcctactgaggacccctccaccagatcacagggactccctcggaggtggagcagca
ggccggccccctttgctccagactccgggggcagccaggtccagcctggtaggacgtctg
caagcgctcgcaggctttactcctgataatcgctggaaccaagccaggggggactttgac
gagcgagatggtatccgaggtggcccgcaagctcctggtggtccaaagggcttccaggag
gagcgaccaacacctgggcagaattttcccaaccgctttgacagccgtcctgggacagca
ggagctgctggggctcctggaaatgcaggagctgctgcggggccacagaactggaaccga
ggaggcggcggcggaggtggtggcggcggtggtggtggtgctgctgccccagcacctttt
gacagtgaactacatcaagacctagacgagcgaagacgcccgtgggacaggcagagagac
agagatgaaagagattttgacttcagaagggagatgaacgggaaccgccacagccgcgag
agggagagggagcgcgagagggagcgtgagagggaaagagacagagatcgaggcagagat
cgcagcagggactttgaacgtgacagagaccgcgacaaagagagagaccgcgagagggaa
cgtgaacgtggtggttggacacctcttcttccactccccactccccttcttccaacgccg
actctcaatcctaatctgaccctgaaccaaggcaaattactctcaccacttaaattaaac
ccccagatgcagtcacgtttccagtctcccctcctgcctcagcttcagggcaaaccttcc
ctcatgggtttgaaccagcctctcccgccagttcagatcaagactccgcctccctcacag
agctctgctgctgctgcacccgagccccagtcagaaaccgcagctccggtgtctgagaca
cctgaggcgcagtcgccaccctcgacccaatcacctgagcagtcacctgagcagtcacct
gaccaatcacctgataacaagagtcagagcccagtgactgaggctcccatccaggcccag
tcatcaccatcatcatcatcatcatcaccaccacagtcagagacccctcctcaatcagaa
tcacaattccagcccacagtccagtccccctccaaatccgtctcctctccagacactgag
accccaaaccaagcctcaccactggttgaggcgtcatcccaggactcacccgtggccttc
acattagcccccgtcagcccccgcgaggagacgaccccctctccggaggagcgggaaagt
tcgccgaagaacgatgacgagtcggaagactccagagaattctcggtccaacagcagtgg
ctcaacggacccgggctggacaatagcaatgtggctgagcccacaccagagggctccccc
gagtcctccccagtccccttctctgattctgtgcgcccagaaagtgaaccggagcagctt
gcttcgcccaaggacgtagacaatgaacagagtgagcccgcggaggaagctgcgagtcag
ccagtggtagacactgtcacagacactgaggggacataa
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