Solea senegalensis (Senegalese sole): 122783919
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Entry
122783919 CDS
T07721
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122783919 (ddx1)
03016 Transfer RNA biogenesis [BR:
ssen03016
]
122783919 (ddx1)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122783919 (ddx1)
Spliceosome [BR:
ssen03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122783919 (ddx1)
Transfer RNA biogenesis [BR:
ssen03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
122783919 (ddx1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
122783919
NCBI-ProteinID:
XP_043904821
LinkDB
All DBs
Position
LG17:complement(8863988..8870287)
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AA seq
739 aa
AA seq
DB search
MAFSEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVI
QIVYETLKDQQEGKKGRASIKTGGAIFNNWQMNPYDRSTAFAIGGDGLCCQSREFKEWHG
CRSTKGVTKGKYYYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFDS
YGEEFTMHDTIGCYLDLDKSQISFSKNGNDLGLAFEIPQNLKNQAFFASCVLKNAELKFN
FGGETFKNPPKSGFVALDQAPEAHAIKSSQTGSAKVSQVKVSSNAPKALILEPSKELAEQ
TLNNVKHFKKYVDNPKLRELLVIGGVAAKEQLSVLEQGVDIVVGTPGRLDDLISTGKLSL
SQIRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSER
IMHFPTWVDLKGEDSVPETVHHVVVPVNPKVDRLWERLGKNHIRTDEVHAKDNTRPGANS
AEMWSEAIKMLKGEYTVRAIKEHKMDQAIVFCRTKIDCDNMEQYFIQQGGGPDSKSHQFS
CVCLHGDRKPNERKNNLDRFKRKEVRLLICTDVAARGIDIHGVPHVINVTLPDEKQNYVH
RIGRVGRAERMGLAISLVAMEKEKVWYHVCPNRGRGCYNTRLKEDGGCTIWYNEKELLSD
IEEHLKCTITQCEPDLKIPVDEFDGKVTYGQRRATGGGNYKGHVDALAPTVQELASLESE
AQTSFLHLGYLPNQLFRAF
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggcgttttctgaaatgggagttatgcctgagatcgcgcaggctgtggaagagatggac
tggctgctacctactgacatacaagcagagtctattccccttattcttggtggaggagac
gtactcatggcagcagaaactgggagtggtaaaacaggagccttcagtatccctgtgatc
cagattgtatatgagaccctgaaggatcagcaggaaggcaagaaggggagagcctccatc
aagactgggggagcaattttcaacaactggcagatgaatccatatgaccgcagcacagcc
tttgctattggtggagatggactgtgctgccagagcagggagtttaaagagtggcatggc
tgtcgctctacaaaaggtgtcaccaaaggaaagtactattatgaggtgacctgccatgat
cagggtctgtgtagaataggctggtccaccagtcaggcagcgttggacttgggaactgat
aaatatggttttgggtttggagggactggaaagaaatcaaacaacaagcagtttgacagc
tatggagaggagtttactatgcatgatacaattggatgctacctggatttagacaaaagc
caaatttccttctccaaaaatggcaacgacctcggcttggcttttgaaatcccacagaat
ctgaagaatcaggccttctttgcctcctgcgtgctcaagaatgcagagctgaagttcaac
tttggaggggagacctttaaaaacccccccaaaagtgggtttgttgccctggatcaggca
ccagaggctcacgccatcaaatcctctcagacaggcagtgctaaagtcagtcaggtgaaa
gtatcatccaatgctcccaaagccctgatcctcgagccgtcaaaagaattagctgagcaa
accctgaacaacgttaaacactttaagaaatatgtagacaaccccaaactcagggaactg
ctggtgattggtggtgtggcagcaaaggagcagctgtctgtcttggaacaaggggttgac
attgtggtgggaacacctggcagactggatgacctcatatccactgggaaactcagtctg
tcccaaattcgctttctggtcctggatgagtgtgatggcctcctctcagcaggctataca
gattttatcaacagaatccataaccaaatcccacaggtgacgtctgacggcaagaggctg
caggtgatcgtttgttcagccactctccactcctttgacgtgaagaagttgtccgagcgc
atcatgcattttcccacatgggtggacttgaagggtgaggactctgtcccagagactgtc
catcacgtggtggtgcctgtgaaccctaaagtcgatcgtctctgggagcgtctgggtaaa
aaccacatccgcactgacgaagtccatgccaaagataacaccagaccgggagccaattct
gcagaaatgtggtcagaagcgattaagatgctgaagggcgagtacacagtgagggccatc
aaagagcacaaaatggaccaggccatagtcttctgtcgcaccaagatcgactgtgacaac
atggaacagtacttcatccagcaaggaggaggtccagatagtaaaagccaccagttttct
tgtgtttgtctccatggcgatcgcaaacccaatgagcgtaaaaataacttggatcgtttc
aagagaaaagaggtgaggctcctgatctgcacagatgtagctgcgagaggaattgacatc
cacggtgttcctcacgtgattaacgtgactctgccagatgagaagcagaactacgtccat
cgcatcggcagagtcggacgagccgagagaatgggactggctatttccttagttgctatg
gaaaaagagaaggtgtggtaccatgtttgccctaaccgaggcaggggttgctataacacc
cgcctgaaggaggacggaggttgcaccatctggtacaatgagaaagagctcctgtcagat
atcgaggagcatctgaagtgcaccatcacccagtgcgagccagaccttaaaatacctgtg
gatgagtttgatggaaaggtcacttatggtcagcgcagggcaacgggaggtggtaactac
aagggtcacgtggacgcgttggctccgacggtccaggagctcgctagcctcgagagtgaa
gcccaaacttccttcctccacctcggatacctgccaaaccagctcttcagagccttctaa
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