Solea senegalensis (Senegalese sole): 122784340
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Entry
122784340 CDS
T07721
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03008
Ribosome biogenesis in eukaryotes
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
122784340 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
122784340 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssen03021
]
122784340 (xrn2)
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122784340 (xrn2)
03009 Ribosome biogenesis [BR:
ssen03009
]
122784340 (xrn2)
03016 Transfer RNA biogenesis [BR:
ssen03016
]
122784340 (xrn2)
Transcription machinery [BR:
ssen03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122784340 (xrn2)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
122784340 (xrn2)
Ribosome biogenesis [BR:
ssen03009
]
Eukaryotic type
Pre-60S particles
RNases
122784340 (xrn2)
Transfer RNA biogenesis [BR:
ssen03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
122784340 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
122784340
NCBI-ProteinID:
XP_043905511
LinkDB
All DBs
Position
LG17:20203459..20233061
Genome browser
AA seq
982 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVHCVEEKGRESNGVRVPVDTTKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLYNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELTDEKHRIREEIIQRGGYLPPEEIKERFDSNCITPGTEFMDNLAHCLRYYVAD
RLSNDPGWKNVTVLLSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQMGHEIKDCQGTAREKQGEHDEFAGTVPVSEQE
FIFIRLCVLREYLARELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVRIYKDVVHKTGGYLTENGYVNLERVELIMQAVGVAEDNIFKKRKEDDESFKRRMKD
KKKRMKAEQRGPAYLTTGQFAPQALGRRDRPDAVQNARHQAYDMRMQREQHNMDAAQSLK
AMMKNGGNSSAGTSDSADNRGVKRKAGDSDSEPEPEDNVRLWEDGWKQRYYKTKFDVDVS
DEDFRKKVVKSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKEMFTEFETDTK
PFKPLEQLMGVFPAASGNFLPPTWRNLMSSPDSSIIDFYPDDFAIDLNGKKYAWQGVALL
PFVDERRLRAALADVYPDLSAVEVKRNSLGSDVMFLSKSHPLFDFIHELYRTEAREGTEI
PAELCHGIQGTLNLDDDPILPDNPVTSPIPMLRDISQNSAIGVKFKDPQYADGFVFKAVL
LPDAKMPTKVLRPDEWVKGNGESWRPQLGFNSNRQQVHLDQSGFRALGHSMNRNQGRGQY
SNAPPPNSYQHGNYRSSASGGHQPFQHSRQNSLLGAPPSFHQPQYPRQQQQRGGHGWDRA
VQSQQSAYQQNMNRGWGGGATSGGGGATPGGGGGYQQQQQQHYDQRRDDWHDRRDNRGQH
QQGYGSGRGFPPPPPSRRYNWK
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcgtttttccgctggctgagccggaagtatccgtctatcattgttcac
tgtgtggaagagaagggaagagaatctaatggagtccgtgttcccgtcgacacgacgaag
cccaatcccaacgaggtggaatttgacaacttgtacttggacatgaatgggatcattcat
ccttgtacacatcctgaagacaaacctgcacccaaaaatgaagatgagatgatggtggcc
attttcgagtacattgaccgtctctataatatcgtgcggcccaggagagttttgtacatg
gccatcgatggtgtcgccccgcgcgccaaaatgaaccagcagcgctctcgccgtttccgt
gcctccaaagaaggagtggagctgacggacgagaagcatcgcatcagggaggagatcatc
cagagaggaggttaccttccacctgaggagattaaagagaggtttgacagcaactgcatc
actccaggaacggagttcatggacaacctggcacattgtcttcgatactatgtcgcagac
agactcagcaatgatccggggtggaagaatgttaccgtccttctgtctgacgccagtgtt
ccaggtgaaggcgagcacaagatcatggactacatccgcagacagagagctcaacccaac
cacgaccccaacactcaccactgcctgtgtggagccgacgctgacctgatcatgctgggc
ctcgccacgcacgagccaaacttcaccatcatccgagaagagttcaaacccaacaaaccg
cggccgtgtgctctctgcggacagatgggtcacgaaatcaaagactgtcaggggacggcc
agagagaagcagggagagcacgacgagtttgccggcacggtgccggtctctgagcaggag
ttcatcttcatcagactgtgtgttctgagagagtatctggccagagaactgaccatggcc
agtttgccgtttccctttgactttgagaggagcgtcgacgactgggtcttcatgtgcttc
tttgtcgggaacgacttcttacctcacctgccgtccttggagatcagagaaggagcgatc
gatcgactggtcagaatctacaaagacgtcgtgcacaaaactgggggttacctgacggag
aacggctacgtcaacctggagcgggtggagctgatcatgcaggcggtgggcgtggccgag
gacaacatcttcaagaaacgcaaagaggacgacgagagcttcaagaggagaatgaaagac
aaaaagaagcggatgaaagcggagcagcgaggccccgcctacctgaccacgggccagttc
gccccacaggctctggggagaagagaccgacccgacgcggtccagaacgctcgccatcag
gcgtacgacatgaggatgcagagggagcagcacaacatggacgcagctcagtctttgaag
gccatgatgaagaacggaggcaactcgtctgcggggacgagcgacagcgcagacaacagg
ggggtgaagaggaaagccggcgacagcgacagcgaacctgagcctgaagacaacgtcagg
ctgtgggaggacggctggaaacagcgatactacaagaccaagtttgacgtggacgtgagc
gacgaagacttcaggaagaaggtggtgaagtcgtacgtggagggactgtgctgggtgctg
cgctactactaccagggctgtgcctcgtggaagtggtacttcccgttccactacgccccg
ttcgcctccgacttcaaagacatcaaagagatgttcaccgagtttgagacggacaccaaa
ccgtttaagcctctggagcagctgatgggagtgtttcctgccgccagcggtaacttcctg
cccccgacatggcggaacctgatgagcagccctgattcctccatcattgacttttacccc
gacgacttcgccatcgatctcaacggcaagaagtacgcgtggcaaggcgtggctttgttg
ccgtttgtggacgagcggcggttgagggcggcgctggccgacgtttatcccgacctctca
gcagtggaagtgaagaggaacagtctgggaagtgacgtcatgttcctcagtaaatctcac
ccgctcttcgacttcatccatgaactttatcgcacagaagctcgagagggaactgagatt
cctgcagagctttgccatggaatccaaggtacattaaatcttgatgacgaccctattcta
ccagataatccggtgacgtcgcccatcccgatgctgcgagacatttcacagaacagcgcc
atcggagtgaagttcaaggatccgcagtatgcagatggctttgtgtttaaggcggttctc
ctgcctgacgccaagatgccgaccaaggttctgagaccggacgagtgggtgaaaggaaac
ggggaatcatggagacctcagctgggcttcaactcaaaccggcagcaggttcacctggac
cagtcaggcttcagagctctgggtcacagcatgaacagaaaccaaggcagaggacagtac
agcaacgctccaccaccaaacagctaccagcacggaaactaccgttcttcagccagcggc
ggccaccagcctttccaacattccaggcagaacagtctgctcggagctccgccctctttc
caccagccacagtatccgaggcaacagcagcagcgcggaggtcacggctgggatcgagcc
gttcagtcacaacaatctgcgtaccagcagaacatgaaccgtggctggggaggcggagcc
accagtggtgggggcggggcaacccctggtggcggtggtggttaccagcagcagcagcag
cagcactatgatcagcgtcgtgatgattggcacgatcgcagagacaacagggggcagcac
caacagggttacggctcaggccgaggtttcccgcctcctcctccgtcaagaagatacaac
tggaaatga
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integrated database retrieval system
