Solea senegalensis (Senegalese sole): 122784974
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Entry
122784974 CDS
T07721
Symbol
ddx42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122784974 (ddx42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ssen03041
]
122784974 (ddx42)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122784974 (ddx42)
Spliceosome [BR:
ssen03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
122784974 (ddx42)
Complex B
122784974 (ddx42)
Complex C
U2 SnRNP specific factors
122784974 (ddx42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
CARF-assoc_HTH
Motif
Other DBs
NCBI-GeneID:
122784974
NCBI-ProteinID:
XP_043906381
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All DBs
Position
LG19:9432238..9440437
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AA seq
909 aa
AA seq
DB search
MNWNKGGPGVKRGFGFGGFALAGKKEEPRPPPNSHTALGATGSGGGYGKNQQLPSFYKIG
TKRANFDEENAYFEDDEDESGSNVDLPYIPAENSPTRQQMQSGGGSDSEDDPLDAFMAEV
EDQAAKDMKKLEEKEKEKKSAKGIRDDIEEEDEQEAYFRYMAENPTAGLTLEEEDENIDY
DSDGNPIPSATKKIILPLPPIDHSEIEYAPYEKNFYNEHEELSSLTGTQMLDLRQKLNLR
VSGAAPPKPCTSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDMIGIAKTGSG
KTAAFIWPMLVHIMDQKELEEGEGPIAIIVCPTRELCQQIHAECKRFGKAYSLRSVAVYG
GGNMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTYLVFDEADRMFDMGFEYQVR
SIASHVRPDRQTLLFSATFRKKIERLARDILIDPIRVVQGDIGEANEDVTQVVELLPGTD
KWSWLTRRLVEFTSTGSVLIFVTKKANCEELATNLTQEGYSLGLLHGDMDQSERNKVISD
FKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGLAYTLLT
NKDTNFAGDLVRNLEGANQAVSKDLMDLAMQNPWFRKSRFKGGKGKKPNIGGGGLGYKER
PGLGAESSERSSSSSSSLLSSTSSFEGYSKPATGAMGDRMAAMKQAFQAQYKSHFVAASS
GPPKLSTKSSGSSGWTSAGSLSSVPTEAANGSERSLSSTMSMSGFTSAGTLSSVPASQTA
SQPSFPPPSSPRESSRDRHSEDRGRHGDSYHRHSDRSERHSSDDRHSDRERHGDRDRDRH
GDRDRHSGSSGSSRHSDSRNGDGSRRDREDRRSDRDGGDRGSGEGKDRGGDDSFAVPEPP
KRRKSRWDN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaacaaaggtggtccgggtgttaagcgaggttttgggtttggaggatttgct
cttgcagggaaaaaggaggaacctcgccctcctccaaattcacacacagcacttggagcc
acaggatcagggggaggatacgggaagaaccaacagctcccatcattctacaaaataggg
accaaaagagctaattttgatgaggaaaatgcgtattttgaagatgatgaagatgagtct
ggtagcaacgtggatctaccgtacatcccggctgaaaattcgcccacacgacagcagatg
cagtctggtggtggctcagacagtgaggatgacccacttgatgccttcatggcagaagtt
gaggaccaagcagctaaagacatgaagaaactagaggaaaaggaaaaagagaaaaagtca
gccaagggtattcgtgatgacattgaagaagaagatgaacaagaagcctacttccgctac
atggcagagaatcccacagctgggctgaccctggaggaggaggacgagaacattgactat
gacagcgatgggaacccaatcccctctgccaccaagaaaatcatcttgccacttcctcct
attgaccacagtgagattgaatatgcaccctatgagaaaaacttctacaatgagcatgaa
gagctcagcagcctgactggaactcaaatgttggatttaaggcagaaattgaacttacga
gtatcaggtgctgcccctccaaaaccatgcaccagcttcgcccactttggctttgatgaa
cagctgatgcaccaaatccgcaagtctgagtacacgcagcccacaccgattcagtgccag
ggtgtgcctatagccctgtccgggcgtgacatgataggtatcgccaaaactggcagtggt
aaaactgcagctttcatctggccaatgctggttcacatcatggaccaaaaggagttagaa
gaaggagaggggcccattgcaattattgtgtgtcccaccagagaactttgtcagcagatc
catgcagaatgtaagcgttttgggaaagcctactcattgcgttctgtggctgtttatgga
ggaggcaacatgtgggagcaggccaaggctctacaggagggggcagaaattgtggtgtgc
actccgggtcgtctgattgaccatgttaaaaagaaggccacatcactgcagagagtgaca
taccttgtgtttgatgaggcagaccgcatgtttgatatgggttttgaatatcaggttagg
tctattgctagccatgtccgcccagacagacagactcttctgttcagtgctacttttcga
aagaagatagagaggctcgccagagacatcttgatagatcctatccgtgtggtgcaggga
gacattggagaagccaacgaagatgtgacccaggtggtggaactgctgcctgggacggat
aaatggtcatggctgacccgtcggttggttgagttcacatccactggctctgtcctcatc
tttgtaaccaaaaaggcaaactgtgaagaactggccaccaacctgacacaggagggctac
agccttggcctcctgcatggagatatggaccagagtgagaggaacaaggtcatcagtgac
ttcaagaagaagaatttgcccgttctagtggccactgatgttgctgctcgaggtctggac
atcccatctattcgcacagtcgtgaattatgatgtggcacgagacattgacacgcacaca
cacaggattggtcgaactggtcgtgctggagagaagggtctcgcttacacccttctcacc
aacaaagacacaaattttgctggagaccttgtgagaaatctggagggagctaatcaagct
gtttccaaagatctgatggatttagctatgcagaatccgtggttcaggaagtccagattc
aagggtggtaaaggaaagaagccaaatattggtggaggtggtcttggttacaaagagaga
ccaggtctaggggctgaaagttctgaacgcagcagcagcagtagcagcagcttgttgtct
tccacgagtagctttgagggctacagcaaaccagctactggggcgatgggagatcgaatg
gctgcaatgaaacaagccttccaggctcaatataagagccactttgtggctgcatccagt
ggtcctcctaagctcagcaccaagtctagtggctcgtcaggctggaccagtgctggcagt
ctgagctctgtgccaacagaagctgccaatggctcagaaaggtccctctcttccaccatg
tcgatgtccggctttacgagtgcgggcaccctgagctcagtgcccgccagtcaaaccgct
tcccagcccagcttccctccaccttcatcaccgagagaaagctcacgggacagacatagt
gaagaccgtgggcgacatggggacagttaccaccgccacagtgatagaagtgaacggcac
agcagtgacgatcgccacagcgaccgagaaaggcatggagacagagatcgtgaccgccac
ggggatcgggatcgccacagtggcagcagtggcagcagccgccacagtgacagccgcaac
ggggatggaagcaggagggacagagaggatcggaggagtgacagggatgggggagacagg
gggagtggggaggggaaggacagaggaggagatgatagctttgctgttcctgaaccacca
aaacgtagaaagagcaggtgggacaactaa
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