Solea senegalensis (Senegalese sole): 122785533
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Entry
122785533 CDS
T07721
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ssen01001
]
122785533 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ssen04054
]
122785533 (ciita)
Enzymes [BR:
ssen01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
122785533 (ciita)
Protein kinases [BR:
ssen01001
]
Serine/threonine kinases: Other
TAF1 family
122785533 (ciita)
Pattern recognition receptors [BR:
ssen04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122785533 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
NPHP3_N
AAA_16
nSTAND3
nSTAND_NTPase5
AAA_22
NB-ARC
AAA
Arf
DUF815
TsaE
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
122785533
NCBI-ProteinID:
XP_043907306
LinkDB
All DBs
Position
LG19:15618705..15638290
Genome browser
AA seq
1372 aa
AA seq
DB search
MRKNFDMNMEVDTELAVGHRTLDLSRGRFTQPETGITDTGFAMYTEGDADSLINHCYSAF
NAGFYSEHFNTSGLTAEVPLDGSCAAAAADTSCNITDTCRGGRDAGYSSDAALAAHCSHN
NAQDHSSFYSTRDHSRSLGVRDNLEHVLRAAYSTTTCSIDRRTDLHEDEGRVDLPWDAKM
HEVDQDPFDFGELPDDLSEFMNDDYLLGTDIFFGDSWLNSEESSNFSDVAMPTDLPCPGN
HQQRQRHELSEQKIHRRKRQRVARSQQCTDTNTPSRPKRRRAADKPQTKVVQDEAVFNQR
PEPSPAETTCLTTTPPRIVHLHPSLQLITIPDAPGCQVIQTLRFPPPVISLPLPNTTPPP
TYILVPSASPLYKRQLQPLSPVDDAVAPVQMSSSPPGSLSDSTSRSMSPHRILPPDPKIE
TSPCKESPLPQSPIVHDIPQAVKDYIQEVKDHMSHSCLDIEDDLNLTSHYVDVQVSQREF
LRSGKNTNRNLDKELIIMGDADRQKSLLGHRQIFRDVNGDNSKRYILLLGNAGMGKTTLI
KKLCLDWSSDCIPQFDFVFLLDGKALSLTRPIYSLQTLLLSLSSFVPSCMDPDAVYAEIL
AASKRVLIIFDGFDELRNYESLLQTQDKELIASMQKDSKVETYTVRQLYSAILQRLLLPG
CTLLLTTRPRGTANQLLRRVDSFLEVCGFTPADVETYLSQYFTDPARAASALDCLKNSSY
LHFLCSNPGLCRFVCLVLEQSKTMNDLSKTLTGLCHQVVLSKIKRAHGENSEAKTPTSLQ
SGEETQVQNSSNGPLKKSHKQTRGRNGTHSRSLRSRGKRKLKQEVNKVDQEECVGRETGG
SEQTELLLQLSSLAWEGVKANTPILPTGKISSEKLQAFGLKSRLFLSYPLRRMPVISQAA
IDGGERDDKGKDRGRTDNEQTTDHIMLWANPFLQSYLAGVHLSLSRNVSDRAFLQTLPFQ
SGSKGRRRPQREELELTQRFAVGLLFHNRTALQTLHSHTETSFRDMLVSKQAVVAKHLQG
LSLGDLSPSQVLEACHYVYEASFTCGDGFSDTCNAQLVSHLAANLPEVLSFRGVPLKPPD
VFVVQNILGKGETEGRSFCLDLEDSGIQVSGLRTLVGLNNINTYRACISDVITLWEQLVQ
CGEEGLLRGAVSKFKIHPLKVTQVCQVQHLAKLVDIHMHKRLQGSCTQSDSILAEGVPAV
KELHKLEFELGPEKGPLGLPKLWELLPGLHNLRHLDLENSKIGDKGSEKLAAALTSLCSL
EILNLSQNCIGDQGVTKLSSTVKCLPKLHRLSLYSNVISDEGAESLAAVLPHMSSLADLD
VKYNKLTDVGAQSLGASLRNCQKIKTLRMWNQCIPYGVFERLQQQDSRILWH
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgaggaaaaattttgacatgaatatggaagtggacaccgagcttgcagttggtcacagg
acactggatttgtccagaggccgtttcacacagccagaaaccgggatcacggacacaggc
ttcgccatgtacacagaaggagacgctgactctctaataaaccactgttactctgctttt
aacgccggattctacagtgagcacttcaacacctctggactgacggcagaagttcctctt
gatgggtcctgtgcagcagcagcagcagacacgagctgcaacatcacagacacctgtcgt
ggaggccgagatgcaggatacagttcagatgctgcacttgcagctcactgctctcacaat
aacgcgcaggaccatagctcgttttactcaacaagagatcacagcaggtcactgggtgtc
cgagacaatttggaacatgtcttaagggctgcttatagcacgacgacatgcagcattgac
cgcagaacagatttacatgaggatgaggggagagtggatttgccctgggatgccaagatg
catgaagtagatcaggacccctttgattttggggagctacccgatgacctatctgaattc
atgaatgatgattacctattgggcacagacattttctttggtgattcgtggttgaatagt
gaggaatccagcaacttcagtgacgttgctatgccaacagatctgccatgcccaggtaac
caccagcagaggcagaggcacgaactaagtgaacaaaaaatccacaggagaaaaagacag
agggttgcccggtcacagcagtgcactgacactaacactccgtccagaccgaaaagacgc
agagcagcagataaaccacaaacaaaggtggtgcaggatgaagcagttttcaaccaaaga
ccagagccaagtcctgcagagaccacatgccttacaaccactccaccaagaattgttcac
ctccatccctcccttcagctcatcaccatcccagatgctccgggatgtcaggtcattcag
acgctgaggttcccccctcctgttattagtcttccactccccaatacaactcctccacct
acatacatattagtcccttctgcctcaccactctacaaacgccaattgcagccactctcc
ccagtggatgatgcggtagcaccagtccaaatgagttcatcaccaccaggatctctgtca
gactccaccagtagatcaatgtctccccatcgtattttaccacctgaccccaaaattgag
acgtccccatgtaaagaatccccgcttcctcagtctcccattgtccatgatattccacag
gctgtaaaagactacattcaagaagtcaaagaccacatgagtcactcctgcctggatata
gaggatgaccttaatctgacctctcattatgtggatgtgcaagtgagccagagagagttt
cttcgctctgggaaaaacacaaacagaaacctggacaaagagctaatcatcatgggagat
gcagatcggcaaaaaagcttgttgggacatcgacagatcttcagagacgtaaatggagat
aactccaagcgctacatactgctgcttggcaatgcaggcatgggaaagaccacactcatc
aagaaactgtgccttgactggtcctcagactgcatcccacagtttgactttgtcttctta
ttagatggcaaagctctctctttaacgaggccaatctatagtctccagacccttctttta
agtctctcctcctttgttccttcttgcatggacccagacgccgtctatgctgaaatcctt
gcagcctctaagcgtgtgctcatcatttttgatgggtttgatgagttgcggaactatgaa
tccctgctccagactcaagacaaagagttgatagcatcgatgcagaaagacagtaaagta
gaaacctatactgtaaggcagctgtactctgccatccttcaaaggctccttcttcctgga
tgcactcttctgcttacaacgcggccaagaggaacggccaatcagctcctacgccgtgtg
gatagctttctggaggtttgtggcttcactcccgcagatgtcgagacttatttgtcccag
tactttacagatcctgcccgcgcagcatctgctttggactgcttgaagaactccagctat
ctacatttcctctgctccaaccctggactatgtcggtttgtttgcttggtgttggaacag
tccaaaactatgaacgacctctcaaaaactttgacagggctctgccatcaagtggttctc
tcaaaaataaaaagggcccatggggaaaactcagaggcgaaaacaccaacatccctgcaa
tctggagaagaaacacaggtacaaaactcaagtaatggcccattgaaaaagagccacaaa
cagactcgtggtcgcaatggtactcactctcgcagcctaagatcaagagggaagagaaag
ctgaagcaagaagtgaataaagtggatcaagaagagtgtgttggaagggagaccggtgga
tcagagcagacagagttgctcttgcagcttagctctttggcgtgggagggggtcaaagcc
aatacgcccatccttcccacaggaaagatctcgtctgaaaaactccaggctttcggcctc
aagtcaaggcttttcctctcttaccctctgaggaggatgccagttatatctcaagctgcg
attgatgggggagaaagagacgacaagggaaaggacagaggaaggacagacaatgaacag
acgactgaccacatcatgttgtgggccaacccctttctccagagttacctggcaggtgta
catctatctctgtccaggaatgtgtcggaccgtgccttcctccagaccctgcccttccag
tcaggctccaagggacgtcggcgaccacaaagggaggaactagaactcactcagcgattt
gcagttggcctcctgtttcacaacagaacagcgctgcagacacttcactcacacacagag
acgtccttcagggacatgttggtcagcaagcaggctgtcgtggcaaaacacctgcaaggt
ctttcacttggtgacctgagtccttcccaggtcctggaggcctgtcactatgtgtatgaa
gcgagtttcacatgcggcgatggattcagtgacacttgcaacgcacaactggtttctcac
ctagcggcaaatcttccagaggttttgtcatttcgcggggttccgctgaaaccgccagac
gtgtttgttgtgcagaacatactcgggaagggtgaaactgaaggtcgaagtttctgcttg
gatctggaagattctgggattcaggtttctggactgaggactctggtggggctcaacaac
atcaacacatacagggcgtgtatttccgatgtaattaccctgtgggagcagcttgtgcag
tgtggtgaggaggggctcctacgaggggcggtgtccaagttcaagatccaccctctcaaa
gtcacacaggtgtgtcaggtgcagcacctggcaaagctggtggacattcatatgcacaag
aggctgcagggcagttgcacccaatcagattccatcctggcagaaggggtaccagccgtc
aaggaactacacaagctggagtttgagcttggcccagagaaaggtccactgggtcttccc
aagctgtgggagctcctgccaggtctccataacctgcggcacctcgatcttgagaatagt
aagataggggacaaaggatcagagaaattggctgctgctttaacgtcactttgttccttg
gaaatactgaatctatctcagaattgtataggagaccaaggggtgacaaaactgtcaagc
acagtgaagtgtctgcccaaactgcaccgtttaagtctttacagtaatgtgatttctgat
gaaggggctgaaagtttggcagctgttctcccacacatgtcttctctcgctgacctggac
gtgaagtacaacaagctgacagatgttggagcacagagtctcggagccagtctgagaaac
tgtcaaaagataaaaactttaagaatgtggaaccagtgtattccatatggagtgtttgag
cgtctccagcagcaagacagccgcatcctctggcattaa
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