KEGG   Solea senegalensis (Senegalese sole): 122785788
Entry
122785788         CDS       T07721                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4 isoform X1
  KO
K12881  THO complex subunit 4
Organism
ssen  Solea senegalensis (Senegalese sole)
Pathway
ssen03013  Nucleocytoplasmic transport
ssen03015  mRNA surveillance pathway
ssen03040  Spliceosome
ssen05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:ssen00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122785788 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    122785788 (alyref)
   03015 mRNA surveillance pathway
    122785788 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    122785788 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssen03019]
    122785788 (alyref)
   03041 Spliceosome [BR:ssen03041]
    122785788 (alyref)
Messenger RNA biogenesis [BR:ssen03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     122785788 (alyref)
    TREX complex
     122785788 (alyref)
Spliceosome [BR:ssen03041]
 Complex C
  Other components
   EJC/TREX
    122785788 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122785788 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 122785788
NCBI-ProteinID: XP_043907675
LinkDB
Position
LG19:complement(14754329..14757236)
AA seq 273 aa
MADKLDMSLDDIIKQNRQQRGGGRGGRGRGRGGSGGARGGGAGRGGVGGGFGGRGGGSGP
MRSRQNLNRARGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGTAGGGGGAGVETGGKLLVS
NLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADAHKAMKQYNGIPL
DGRPMNIQLVTSQIDTQRRPMQGLNRGGGGMNRGRGGGFGGMQRGRGGRGASGSRGRGRG
GRGGSGGGTSKQQLSAEELDAQLDAYNARMDTS
NT seq 822 nt   +upstreamnt  +downstreamnt
atggccgacaaactggatatgtctctagatgacattattaagcagaacaggcagcaaaga
ggaggaggccgcggtggaagaggtcgaggccgcggaggctccggtggcgcccgaggagga
ggtgctggtcgcggtggagtcggtggcggatttggaggccgaggcggtggatccggcccc
atgaggagccgacagaacctgaaccgcgctagaggcagaccaacgccttacagcaggcct
aaacagcttccagataagtggcagcatgacatgtttgacaacggcttcagcggcttcaat
ggcactgctgggggtggtggaggagctggtgtggaaactggagggaagctccttgtctcc
aatctcgactttggggtctcagatgccgacattcaggaactttttgctgaatttggaacg
ctgaaaaaggctgcagttcattacgaccgatctggaaggagcttgggaactgctgatgta
cactttgaaaggagggcggatgcacataaggccatgaaacagtacaatggcatcccactt
gatgggcgaccgatgaacatacaactcgtcacatcacagatagacacacagagacggcct
atgcaggggctaaatagaggtggtgggggcatgaacagaggtcgtgggggtggatttgga
ggcatgcaaagaggtcgaggaggacgtggtgctagcggttcaagaggaagaggtcgagga
ggacgtggcgggagcggtggtggcaccagcaagcagcagctatcggcagaagaacttgat
gctcagttagatgcctacaatgctagaatggacaccagctaa

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