Solea senegalensis (Senegalese sole): 122786215
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Entry
122786215 CDS
T07721
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122786215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122786215
03036 Chromosome and associated proteins [BR:
ssen03036
]
122786215
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122786215
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
122786215
mRNA degradation factors
5'-3' decay
Decapping complex
122786215
Chromosome and associated proteins [BR:
ssen03036
]
Eukaryotic type
Gene silencing
piRNA pathway
122786215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
122786215
NCBI-ProteinID:
XP_043908295
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All DBs
Position
LG20:complement(13946260..13957258)
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AA seq
483 aa
AA seq
DB search
MATARTESVGTVVMGLNKQNGQLRGQTKPASVQPAPMTQGKALGLPQKDGGGIKFGDDWK
QSLKLPPKDTRVKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSG
RDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQICIQISKHLGG
VKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEADKLLS
QDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMAKHLQKPYEINLMEELTLKGITQFY
AYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQEYR
NRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGL
AINLITSEDRFNLKTIEEQLVTDIKPIPSSIDKSLYVAEYHSGSGDCDVEEVEEKSGNQQ
DST
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggccagaacagaaagcgttggcacagtcgtgatgggactgaacaagcagaat
ggccagctcagaggacagaccaaacccgcctcagtccagccagcacctatgactcaagga
aaagctctgggtttaccccagaaagacggtggaggtatcaagtttggagatgattggaaa
cagagcctgaagctccctcctaaagataccagggtcaaaacctcagatgtgacgtccact
aaggggaatgaatttgaagattactgtctcaaacgagaacttctgatgggcatctttgag
atgggctgggagaaaccatcacctattcaggaggagagcattcccatcgccctgtctgga
cgagatatactggcccgggctaaaaatggaacgggaaaaagtggagcctatcttatcccg
ctgctggagagaatagacctgaaaaaggaccacatacaggccatggtcatggtgcccact
cgtgagctggccctgcaggtgagtcagatatgcatccagatcagcaaacacctcggagga
gtcaaagtcatggccaccaccgggggcaccaacctgcgggatgacatcatgcgcctggac
gagactgtgcatgtggtcatcgctaccccgggcaggatcctggacttgataaagaaggga
gtggcaaaggtggacagagtccagatgatggtgatggatgaggcggataagctgctgtct
caggactttgtggtgctcatcgaggatatcattagctttctggccaaaaacaggcagatc
ctgctctactctgcaaccttccccatcagcgtacagaagttcatggccaagcaccttcag
aaaccctacgagataaacctgatggaggagctgacgcttaagggcattactcagttctac
gcctatgtcactgagaggcagaaagtccactgcctcaacactctcttctccaggcttcag
atcaaccagtccatcatcttctgtaactctactcagcgggtggagctgttggccaagaag
atcactcagctcggctactcctgcttctacatccatgccaagatgatgcaggaatacaga
aaccgtgtgttccatgacttcagaaatggactgtgcagaaacctcgtctgcacagatctc
ttcaccagaggtatagacatccaggccgtcaacgtcgtaatcaacttcgacttccctaag
aacgccgagacttaccttcatcgtattggaagatcagggaggtttggtcacctgggcttg
gccatcaacctgatcacatcagaagatcgcttcaacctgaagaccatcgaggagcagctg
gtcaccgacatcaagcccattcccagcagcatcgacaagagcctctacgtggctgaatat
cactcgggcagcggcgactgtgacgtggaggaggtggaggaaaaatcaggaaaccaacag
gacagcacctaa
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