Solea senegalensis (Senegalese sole): 122786634
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Entry
122786634 CDS
T07721
Symbol
skiv2l
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122786634 (skiv2l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122786634 (skiv2l)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122786634 (skiv2l)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122786634 (skiv2l)
mRNA degradation factors
3'-5' decay
Ski complex
122786634 (skiv2l)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
Motif
Other DBs
NCBI-GeneID:
122786634
NCBI-ProteinID:
XP_043909017
LinkDB
All DBs
Position
LG20:766756..782932
Genome browser
AA seq
1245 aa
AA seq
DB search
MDRINVAPVGPMDLPLSLLEMGCSGRFELITHPLPGQPLPPHSTLPHGLPPTSLNLETEV
ENQFLRDPVWLPVHDTDFAFQKFLKVTKREPNVDSLLNCTQSPLHSGLSVVRDPTTGMLL
DFKEVLQENTGLSAKNSLSLHRQPGPPSESLRGSNTNYPFLPGGMEELTLEQIKKKSELE
QDIDFENDLLKIPPGFKAGIDFSDKDAKIAKPEVNLMSLLSTFVDIVDLQPEAEEKQEGK
GGEKSPKLPRTNSLEDLGIKDAVSSSTPSENGKDEKSKPKENPEKKKKWAIPVDVASPCD
DFYKRIPNPAFKWPFELDTFQKQAVLRLEAHDSVFVAAHTSAGKTVVAEYAIALSQKHMT
RTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLSPESSCLIMTTEILRSMLYNGSEVI
RDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSDWIGRIKKRH
IYVISTMKRPVPLEHYLFTGNSTKTQKEMFLLVDATGNFLTKGYYAAVDAKKERTSKHAQ
SFGTRNTSQNTSASQDRTVWLTLLHFLSQRQQTPVVAFTFSRTRCDDNARSLDSMDLTTS
IEKAEIHSFFQKSLSRLRGGDRQLPQILIMRDLLKRGIAVHHSGILPILKEVIEMLFSRG
LVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLDATGT
VIILCKAGVHEMADLHVMMLGKPTILQSQFRLTYTMILNLLRVEALRVTDMMRRSFSECH
RDTQSQETRISQLKQTLSSLPPLDTEGQLSDLTSYYHTVTELRTTTEALQRAMLESVNGL
KALSVGRVVVVNNKQHLNALGVILQVSSDSVNRAFTTLIICEKGNEEGEGKASNTSLPHL
YNTALFVPEGPCSHTVQKLKFQDISGITVKTLKVIPDRIIDNYNKRQQPRFRLDPPGQAI
STATQELLRLAEANPGGIAALDPVNDLQLKGVDVVENSMRLRVLRESLKEFNCTHSPMFA
EQFARVTERMSVQEELDRLLFLVSDQSLSLLPEYHQRIKVLESLQYIDSSGAVQLKGRVA
CQISSHELLLTELLFENVLSPLAPEESAALLSCLVFTQNTQVEPHITNTLQEGIDRVLSV
AQRIGELQRNCGIAQTAEEFVGQFKFGLTEVVYCWARGMPFAEIALLTDVQEGTVVRCIQ
RLDEVLKEVRQAARIVGDSVLGSKMEKASLAVRRDIVFTASLYTH
NT seq
3738 nt
NT seq
+upstream
nt +downstream
nt
atggacagaataaatgtggcccctgtgggccctatggacctgccactgtctctgctggag
atgggatgctctggcaggtttgagctcatcacacatccccttcctgggcaacctctacct
ccacacagcacgctcccgcatgggcttcctcccaccagcctgaacctggagacagaagtt
gaaaaccagtttttgcgggaccctgtctggcttcctgttcacgacactgactttgccttc
cagaagtttctcaaggtcacaaagagagagcctaatgttgactctttactcaactgcact
cagtctccgcttcactcaggtctctcagtcgtgagagatccaaccactggaatgctgctg
gatttcaaagaggttttacaggagaacactggcctctcggctaaaaactcactttcatta
catcgtcaacctgggcctccttctgagagccttcgtggaagcaacactaactaccccttc
cttcctggaggaatggaggagcttacgctggaacaaatcaagaagaaatcagagttggag
caggacatagactttgagaatgatttgctcaaaatccctcctggttttaaagctggaata
gacttctctgacaaagatgccaaaatagcaaagcctgaagtgaaccttatgtccctcctg
tccacatttgtggacattgttgacttacaacctgaggcggaggaaaagcaggaaggcaaa
ggaggtgaaaagtctcctaaactccccagaacaaatagtcttgaagatctaggcatcaag
gatgctgtttcatcctccactccctcagagaatggaaaagatgagaaatcaaagccaaaa
gagaatccagagaagaaaaagaaatgggccatccctgtcgacgtagcttcaccctgtgat
gatttctacaaacgcattcccaacccagctttcaagtggccgtttgagctggacactttc
cagaaacaagcggtgctgaggctggaggcccacgactctgtatttgtcgctgcgcacaca
tcagctggcaaaacagtggtggccgagtatgccatcgctctctcgcagaaacacatgaca
cggaccatctacacatcccccatcaaagcattgtccaatcagaagttcagggactttaag
aacaccttcggggatgtgggactcctgacaggcgatgtccagctcagtcctgaatcttca
tgcctcatcatgaccactgagatcctcaggtcaatgctttacaacggctctgaggtcatc
agagacttggagtgggtgatctttgacgaggttcattacatcaatgacgctgagaggggc
gtcgtgtgggaggaggttttgattatgcttcctgatcacgtcagtatcattctcctcagt
gccacagtgccaaacgctgtggagtttagcgattggatcggtcgcatcaagaagaggcat
atttatgtgatcagcacaatgaagaggcctgtgcctttggagcattatctgttcactgga
aacagcaccaagacccagaaagagatgtttctgcttgtggatgctacaggcaacttcctc
acgaaagggtactatgcagccgttgatgccaaaaaggagcggaccagcaaacacgcacaa
tcctttggcacaagaaatacttctcaaaacacttcagccagtcaggaccgaacagtgtgg
ctcaccctcctgcacttcctgtcccagcgacagcagaccccggtagtggcgttcaccttc
tcgcgaacacgctgtgatgacaatgcccgctccctggactccatggatctgaccacgtcc
atagagaaggcagagatccactctttcttccagaagagcctgagtcgcctccggggagga
gatagacagctgcctcagatcttgatcatgagggatctgttgaagaggggaatagcagtt
catcacagcggaatcctgccaatactaaaggaggtcattgagatgctcttctcaagaggg
cttgtaaaagtgctgtttgccacagagacatttgcgatgggagtgaacatgcctgccagg
actgtggtgttcgacagcatcaggaaacacgacgggaccggctttaggaatttgctgcca
ggcgaatatattcagatggcgggcagagcagggaggagaggactggacgccacaggcacc
gtcattatcctgtgtaaagccggcgttcatgagatggcagatctgcatgtcatgatgctg
ggtaaacccactatcctccagtctcaattcagactgacctacactatgatcctcaacctg
ctgcgagtcgaagccctccgtgtgaccgacatgatgaggaggagcttctccgaatgccac
agagacacgcagagtcaagagacacggatcagtcagctgaagcagactctgtcctctctg
ccccctctggacacggagggccagctgtccgacctgacgtcgtactaccacacagtgacg
gaactccgaaccaccaccgaagccctccaacgcgctatgctggagtcggtgaacgggctg
aaagctctgtctgtgggtcgagttgtggtggttaacaacaagcagcatctcaacgccctc
ggagttatcctacaggtgtccagtgactcagtgaatcgcgccttcacaactctgatcatc
tgtgagaaaggcaatgaggaaggagaaggaaaagccagcaacacctctttgcctcacctc
tacaacacagctctgtttgtacctgaaggtccttgcagccacacagtccagaagctgaag
tttcaggacatttcaggcatcacagtgaaaaccctcaaagtgattcctgacaggatcatt
gacaactacaacaagaggcaacaaccgcggttcagacttgaccctccgggccaagctatc
tccacggcgacccaggagctcctgcgattggctgaggccaacccggggggaatagcggcc
ctcgaccccgtgaacgacctccagctgaagggcgtggatgtggtggagaactccatgaga
ctacgtgtgctgcgggagagtctcaaagagttcaactgcacccactcgcccatgttcgca
gagcagtttgctcgggttacggagaggatgagcgtgcaggaggagctggacaggctgctg
ttcctggtgtcggatcagtctctgtctctgttgcctgaatatcaccagaggatcaaggtc
ctcgagtccctgcagtacatcgacagcagcggcgcggtgcagctgaaaggccgcgtcgcc
tgtcagatcagcagccacgagctgctgctgaccgagctgctgttcgagaacgtcctgagt
ccactggcgcccgaagagagcgccgccctgctgtcctgtttggtgttcacacagaacacg
caggtggaaccgcacattactaacacgctgcaggagggcattgatcgggtgctgtcagtg
gcccagcgaatcggagagctgcagaggaattgtgggatagcgcagacggctgaggagttt
gtcggccagttcaagtttggtctgacggaggttgtgtactgctgggccagaggcatgccg
tttgcagaaatcgccctgctcacagacgtgcaggagggcacggtggtccgctgcatccag
cgcctggacgaggtcctgaaggaggtgcgacaggccgcacgcatcgtgggggactccgtc
ctgggaagcaagatggagaaggcgtccctggccgtccgcagggacatcgtcttcaccgcc
tccctttacacccactga
DBGET
integrated database retrieval system
