Solea senegalensis (Senegalese sole): 122786781
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Entry
122786781 CDS
T07721
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
ssen
Solea senegalensis (Senegalese sole)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
122786781
NCBI-ProteinID:
XP_043909202
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Position
LG20:complement(19708217..19753477)
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AA seq
1622 aa
AA seq
DB search
MELRLGFRITLVLVILALTLTGERVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVDSFDVAVDKTRVAVVRYSDRPTIEFNLGRHRTLEDVKRAARNIRYLGGNTMTGDA
ISYTTTNIFTERNGARPAARGIQKVAILLTDGRSQDYVLEPSKAAAKAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPNMKVQPDRFKPNSSSY
GLEEVPGFDLMEYFNVRDILGTRVDEGQSSYVRLGTMPIVQQTEDVFPQGLPDEYAFVTT
FKFRKTSRREDWYLWQVFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIALSVEAKSVSLYLDCKLIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDLPHGPCPKKVVTEAPPVEIPTPTPTVVEQQRGPQVNCSCPA
GGKGDIGAPGVAGPKGEKGDTGSVGAIGPSGIKGEKGETGRVISVKGDRGEKGDSGRIGL
TGPPGQKGEKGLGGVPGIDGLPGDKGDDGEAGLPGDPGLPGQAGQKGIQGDAGVPGVPGL
RGVTGQTGGKGDKGTPGAAGLAGIDGFTGKPGVPGKDGLRGLAGAPGPSGIKGDKGERGL
PGLPGDVVHKEGLRGEKGVVGPAGPPGADGPPGPPGPPGMQGLPGEPGEFGQRGKKGENG
LPGVDGLPGPPGPQGPPGTPGNQGHPGPPGLPGEIGFSGKPGESGKPGLPGKDGLDGLPG
NDGATGARGERGADGFPGKSGPKGDDGPPGPRGPPGERGEAGSPGQPGSDGTRGDRGVPG
ERGVDGPSGPKGDKGDKGDVGSRGPPGIPGNVANVIPEPGEPGTPGEKGEKGDQGKQGDI
GQRGLPGEQGFKGPPGLPGPKGDTGAPGETGRVGDPGPPGIAGPQGLRGLPGSVGIPGII
GPPGPAGQRGDKGEVGKPGSQGPSGTPGDPGLTGPPGPPGKGKDGQQGDHGPQGIQGPPG
LKGQPGPRGEPGVPGEKGSPGEGKSGPPGQPGKNGDSGPVGLRGPPGVAGPMGPAGHNGL
PGRPGEKGSAGEPGKAADLSDLNLKDVCSDCPAGPPGPPGLPGVPGDKGHQGPPGKSGED
GYQGPPGPAGPPGVSGADGGKGMKGDRGPAGSPGDKGEKGHPGPPGHPGPSGLMGTAGND
GQPGSVGPPGPPGEKGKEGLKGIQGPPGLPGLIGQSGKMGKDGRPGEPGEPGKQGEPGPP
GNSGLRGLPGFKGHRGEPGGLGPKGEDGKPGAPGRDGKPGKEGSRGSTGPEGIAGPRGES
GKPGEPGPSGKSGLPGTPGMRGDKGEPGNPGLPGFSGPKGPAGPAGPVGPEGKQGMPGRA
GDRGFKGDKGDTGVKGDKGHSGEPGMPGNPGPPGRKGHTGMMGMSGPPGEVGPSGPQGSS
GNPGLPGPRGESVSLEQMRRLVQEELAKQLDAKLAYLIAQMQPAHVKSTAGRPGPPGSPG
KEGNAGRPGPPGEPGMPGQNGGEGPRGPMGPKGDKGSRGEKGEPGIGERGEQGVTGPIGP
AGLPGYGKDGSPGQAGAQGEPGNPGPHGQPGPAGPPGQCDPTQCAYYASLAQRPHTKNVK
GT
NT seq
4869 nt
NT seq
+upstream
nt +downstream
nt
atggaactacgactgggatttcgaatcaccctggtcttggtcatcctggccttgactctg
actggcgagagggtggaagcacagagagcagggtgcaaaaatgtccactatgacttggcc
tttatcctggatacatcatcaagtgttggaaaagagaactttgagaagatcagacaatgg
gtggcaaacctggtggactcctttgatgtggcagtggacaagacgagagtagctgtggtt
cggtacagcgacagacccaccattgaattcaacctggggagacacaggaccctggaggat
gtaaagagagctgcccgtaacatccgctacctgggggggaatacaatgaccggagatgcg
atcagctacaccaccaccaacatcttcaccgagcggaacggagcgaggcctgctgccaga
ggcattcagaaggtggccatcctcctcacagatggccgaagccaggattatgttttggag
ccctctaaggcagctgccaaagctggcatcagaatgtttgctgtgggcattggggaggcg
ctgaaggaggagctggaggaaatcgccgctgagccaaaaaacgcccacgtcttccatgtg
acagactttaatgccattgacaagatcaggggccggctgaggaggaggctgtgcgagaat
gtcctgtgtccaaacatgaaggttcagcctgatcgctttaagcccaacagcagcagttat
ggtcttgaagaggttccagggtttgacctgatggagtacttcaatgtgagagatattctg
ggaaccagagtcgatgagggccaaagttcttatgtccgcctcggcaccatgcccattgta
cagcaaacagaggatgtgtttcctcaggggctgccagatgaatatgcctttgtgacgacg
ttcaaattcaggaaaacctcacggcgtgaagactggtacctctggcaggtttttgacaaa
tatggaatcccacaggtgtccatccgtctggacggcgagaacaaggcggtggagtacaac
gccgtcggcctgacaaaagacgccgtcagagccgtgttcaaaaaccccgaagtcgacaac
ctgttcgatcgcaactggcacaagattgctctcagtgtggaggccaagtctgtgtctctg
tacctggactgcaagctcatccagactctgcccatcgaagatagggaggacattgacatc
caggggaagacggtgatcggaaagcggctttatgacagcgtgccgattgattttgacctc
caaaggatgatgatttactgtgactccaagcacgcagagctggaaacctgctgtgatcta
ccccatggaccttgccctaagaaagtggtgacagaggctccccccgtcgagatccccacc
ccaacaccgactgtcgtggaacaacaaagaggccctcaagtcaactgctcctgccctgcg
ggagggaagggagacatcggtgcacctggcgttgcaggtcccaagggtgaaaagggtgac
actggctctgtcggcgccataggaccgtcgggcatcaaaggagaaaaaggagaaactggc
agagtcatttctgtcaaaggcgacagaggtgagaagggtgattcaggcagaatagggttg
acaggtcctcctggacaaaaaggagagaagggactcggtggcgtgcctggaattgatggc
ttacctggagacaaaggagacgacggtgaagcgggactgccaggtgatccagggctgccg
ggtcaagctggacaaaagggaattcaaggggacgcgggagttcctggcgttcctggactc
agaggtgtcactggtcaaactggaggtaaaggtgataaaggaactccaggagctgcgggc
ctggctggtatcgatggattcactggaaaacctggtgttcccgggaaagatggtttaaga
ggactggctggtgcacctggccccagtggaattaaaggcgacaagggggagagaggcctg
cctggattacctggggatgtggttcataaagaaggcttgcggggagaaaagggagtggtc
ggacctgctgggcctccaggggccgatgggcctccagggcctccgggtcctcctggtatg
cagggcctacccggggagcccggagagtttggtcaaaggggaaagaagggtgaaaatgga
ttgcctggagtggatggacttcctggacctccaggccctcagggtccaccgggcacccca
ggaaaccaaggtcaccctggacctcctggtctacctggtgaaattggattttcgggcaaa
cctggagagtctggaaagccgggtcttcctggtaaagacggtctggacggtctgcctgga
aatgatggcgccacgggggccaggggagagcgtggagcagacggttttcctggcaagtct
ggacctaagggtgacgacgggcctccgggaccaagaggacctccaggggagagaggagaa
gctgggtctccgggacaaccaggttctgatggaacaagaggagacaggggagttcctggg
gagagaggagtggatggaccaagtgggcccaaaggtgataagggagacaagggtgacgtt
ggatcgaggggaccgccgggcattccaggaaacgtggcaaacgtcatccccgagcctggt
gaacccggaacacctggagagaagggagagaaaggagatcaagggaaacaaggagacatt
ggtcaaagaggattacctggtgaacaaggcttcaagggaccgcctggactgccaggtcca
aaaggtgacaccggagctccgggagagacgggacgtgttggagaccctggtccacctggc
atcgctggccctcaaggtctccgtggactaccagggagtgtgggcatacctgggatcatc
gggcctcccggtccagctggacaaagaggagacaagggtgaagtgggtaaaccaggatca
caaggtccctcaggcacacctggagatcccggtttgactggaccccctggaccaccaggg
aagggcaaagacgggcaacagggagatcatggaccacagggaattcaaggacctccaggg
ctaaagggtcaaccaggaccacgaggtgaaccaggagtaccaggtgaaaaaggttcacca
ggagaaggcaaatcgggaccaccgggacaaccaggaaaaaatggggactctggacctgtg
ggcttgaggggtccaccaggagtcgctggtcctatgggcccagcaggacataatggttta
ccaggaaggccaggagagaaggggtctgcgggagagcctggaaaggcagcagacctttct
gacctgaatttgaaggacgtttgttcagattgtcctgcaggaccacccgggccacctggt
ctcccaggagtcccaggagataaaggacaccagggacctccaggaaaaagtggtgaagat
ggttaccagggcccaccagggccagcggggcccccgggagtctctggagccgatggagga
aagggtatgaaaggtgatcgtggacctgctgggagccctggagacaaaggagaaaagggt
caccccggacctcctggtcatccaggtccgtctggtttaatgggcacagcgggtaacgac
ggacagcccggctctgtcgggcctcctggtccccctggagaaaagggcaaagagggtctc
aaaggaatccagggaccaccagggcttccaggattaataggtcagtctggaaaaatgggg
aaggatgggagaccaggtgaaccaggagaacccggcaagcaaggtgaacctgggccacct
ggaaactctggcctcaggggcctcccaggctttaaaggccacagaggagaacctggaggt
ctcggacctaagggagaagatggaaaacctggagcacctggccgagacggcaaacctgga
aaggagggttcaaggggatcaacaggtccagaaggaattgctgggccaagaggagagtcg
ggcaaaccgggtgaaccaggaccatcaggaaaatcaggtctccctggaactccaggcatg
agaggagacaagggagagcctggcaacccaggattaccaggatttagtgggcctaaaggc
cctgcgggtccagctggtcctgttggccctgagggaaagcaggggatgcccggcagagct
ggtgatcgtggcttcaaaggagataagggtgacacaggtgtgaagggagacaaaggacat
tcgggagaaccaggcatgcctggaaaccctggacctccaggcaggaagggccacacagga
atgatgggaatgtctggtccaccaggagaggtggggccttctgggccccaaggatcttca
ggaaaccctggtctcccaggcccaaggggagagtctgtatcactggagcagatgagacgc
ctcgtacaggaggagctggcaaaacaattagacgccaaattggcttacctcatagctcag
atgcagccagcccatgtgaagagcacagccggccgcccgggacctccaggttctccaggt
aaggaaggcaatgccgggagacctggcccacctggcgagcctggcatgcctgggcagaat
ggaggagaaggacccagaggacccatgggccctaaaggtgataagggatcaagaggagag
aagggagaacctggtatcggtgaaagaggagaacaaggtgtcactggtccaataggtccc
gctggcctgcctggctatggcaaagacggaagcccagggcaagccggggctcagggagag
cctggaaaccctggaccccacggtcagccaggccctgccggtccccccgggcaatgtgac
cccacacagtgcgcctactatgccagcctggcacagagaccccacaccaaaaacgtcaag
gggacttaa
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