Solea senegalensis (Senegalese sole): 122786975
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Entry
122786975 CDS
T07721
Symbol
vps16
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen04140
Autophagy - animal
ssen04148
Efferocytosis
ssen05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122786975 (vps16)
04148 Efferocytosis
122786975 (vps16)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122786975 (vps16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssen04131
]
122786975 (vps16)
Membrane trafficking [BR:
ssen04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122786975 (vps16)
Hops complex
122786975 (vps16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
Motif
Other DBs
NCBI-GeneID:
122786975
NCBI-ProteinID:
XP_043909461
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Position
LG2:complement(746072..756866)
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AA seq
835 aa
AA seq
DB search
MSFITANWNPLGDAFYRKTELYDMCWNLRDSGLRDSLVAAAHYGGPIALLREPQRRSPSS
RPQLEIYLASGISITSFPWKSGPVVHIGWTVTDELLCVQEDGSVLIYNLFGSFKRHFSMG
QEVVQSQVLEAKVFHSPYGTGVAIVTGSSRFTLATNIDDLKLRRLPEVPGLHGKPSSWLV
LTQDRQTKVILSNGPEMFVLDNTSCTPVCPPGLSPQYGSVVHMCVSFSYKYLSLFTDTGH
LWTGSSNLQDKLSIVDTKKKTTPNQMVWCCRPQSQQLSVVLMWDRLLLVAGICGDTIQFP
VDDPCVLVGELDGVRIINSTNQDLLQEVPLVCQDIFKIASMAPGALLLEAHREYEKSSQK
ADEYLREIKEQSMLGEAVRQCVEAAAHEYDANTQKSLLRAASFGKCFLVDFSPDQFVTMC
RELRVLNTVRDGAVGLPLTHTQFKQLTLQVLIDRLVYRQFYPLAIEICRYLKIPDYQGVS
RVLKHWASCKVQQKDLSDEAIARAVCVKVGDAPGVSYSDIAAKAYECGRTELAIKLLDFE
ARSGEQVPLLLKMKRSQLALSKAVESGDTDLVYTVVTYLKNELNRGDFFMMLRNQPVAQS
LYRQFCKLQEQETLKDLYNQDDDHQELANYYITASYREKRLETRLSVLQKAVDEFNKAKN
EFAAKATEEEMRLLRFQRKLDDEKGAGLLGLSLQETMEVLLSLGLHKHTEQLYRDFRLPD
KRYWWLKLKSMAEKHEWEELEKFSKSKKSPIGYLAFVDVCMKSNNKSEARKYVSKVTPEQ
KVRAHMVIGDLEGAADAAIERRNDSEMGAVLSRCSTADCLLIDRLNRARVSASKK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcatcaccgccaactggaacccgctgggagacgctttttaccgtaagacagag
ctgtacgacatgtgctggaacctcagagactcaggactcagagacagtcttgttgctgca
gctcattatggaggaccaatagctctactcagagaacctcagagacgttctcccagttct
cgacctcagttggaaatttacttggcgtctggaatttctatcaccagttttccttggaag
agtggacctgttgtccatattggttggacagtcactgatgagttgttgtgtgtccaagaa
gatggctcagttctgatctacaacttgtttggatcctttaagagacactttagcatggga
caggaagtggtccagagtcaggtattagaggcaaaagtcttccactctccatatggaaca
ggtgttgccatagtaacaggctcctcccgcttcaccttggcgaccaacattgacgatctg
aagctgcgcaggttacctgaagtcccgggtctgcatggtaaaccgtcctcctggctcgtc
ctcactcaggacagacaaaccaaagttattctgtccaacggaccagaaatgtttgtccta
gacaacacgtcctgcacccctgtgtgtcctccaggtctcagtcctcagtatggcagcgtc
gtccacatgtgtgtgtctttcagttacaaatacctgtctctcttcactgacactggacac
ctgtggacaggctcttccaatctgcaggacaaactcagtatagtggacacgaagaagaag
acaacacccaatcaaatggtttggtgttgcagaccccagagccagcagctgtctgtggtg
cttatgtgggacagactcctcctggtggcaggaatctgtggtgacaccatccagtttcca
gtggatgacccgtgtgttctggttggagaactggatggagtccggatcatcaactccacc
aaccaggaccttcttcaggaggttcctctggtctgtcaggacatctttaagatcgcgtcc
atggctcctggagctctgttgctggaggctcaccgcgagtatgagaagtccagtcagaag
gcagacgagtatctgcgggagatcaaggagcaaagcatgctgggagaagcagtgagacag
tgtgtggaggcagcagctcatgagtatgacgccaacacccagaagtctctgctgcgggcg
gcgtcctttggaaagtgtttcctggtggacttcagtccagatcagtttgtgaccatgtgc
agagaactgcgagtcctcaacacggtcagagatggcgctgtgggtctgccactcacacac
acacagtttaaacagttgactctgcaggttctgatagacaggctggtctacagacagttt
tatccattagccatagaaatctgtcgttacctgaagattcctgattaccagggcgtcagt
cgagtcctcaaacactgggcctcatgtaaggtgcagcagaaggacctatcagacgaggcc
atagctcgagcagtgtgtgtgaaggtgggagacgctcctggagtgtcttactctgacatc
gcagctaaagcctacgagtgtggacgcactgagctggccatcaagctgctggactttgag
gctcgctctggagaacaggttcctctgctgctgaagatgaagagaagtcagttagctctg
agtaaagctgtggagagtggagacactgacctggtttacacagtggtcacctacctgaag
aacgagctgaatcgaggagactttttcatgatgctgaggaaccagccggtcgctcagagt
ctctacagacagttctgtaaactacaggaacaggaaactctgaaggatctttataaccag
gacgatgatcatcaggagcttgctaactattacatcactgctagttacagagagaagaga
ctggagacacgtctgtctgtcttacagaaagctgtcgacgagttcaacaaagcaaagaat
gaatttgctgcaaaggccacagaggaagagatgcgtctccttcgttttcagcggaaactg
gatgatgaaaagggggcgggactactgggactgtctcttcaggaaaccatggaggttctg
ctgtcgttaggacttcataaacacacggagcagctttaccgagactttagacttcctgac
aagagatattggtggttgaagctcaagtctatggcagagaaacacgagtgggaggagtta
gagaaattctctaagagtaaaaagtctcctattggttacctggcttttgttgacgtgtgt
atgaagagtaacaacaagtctgaagccaggaaatacgtttccaaggtaacacctgagcag
aaagtccgagctcacatggtcatcggtgacctggaaggagccgctgacgccgccatcgag
cgcaggaacgactcggagatgggggcggtgctgtccagatgctccaccgctgattgtctg
ctgattgacaggctgaacagagccagagtctctgcctccaagaagtga
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