Streptomyces seoulensis: D0Z67_09415
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Entry
D0Z67_09415 CDS
T07029
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sseo
Streptomyces seoulensis
Pathway
sseo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sseo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0Z67_09415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sseo03019
]
D0Z67_09415
03009 Ribosome biogenesis [BR:
sseo03009
]
D0Z67_09415
Enzymes [BR:
sseo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D0Z67_09415
Messenger RNA biogenesis [BR:
sseo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D0Z67_09415
Ribosome biogenesis [BR:
sseo03009
]
Prokaryotic type
rRNA processing factors
D0Z67_09415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
QBJ94082
UniProt:
A0A4P6U477
LinkDB
All DBs
Position
complement(2005873..2010156)
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AA seq
1427 aa
AA seq
DB search
MPPRRRRRAASRPAGAPAAGSGTETTAQPEATAPAAQSGTSGATEPPAETAPRPRRRSTR
RASAPAGTPTAAEAATVTEPAVPAASADEQADAAAETTAPAPRRTRRRASAPAGAPTQVT
AEDNKAEEADVAQDTEDNKAAEPAESATETPAARPRRRATRRASAPAGAPKAAEASEASE
TEKPAEPAPAAETETETETEVPAARPRRRATRRASAPAAEAAVAETPAAQAEPEAEPAPA
AEPEAAPAGRTRRRATRRVSTPTETPPTETPAAETPAVETPAVEAPAAEAEAQPAAEPVA
ETEAAPGRARRRATRRASAPAGAPAAAEEKAEAKAEDKPADKPADKPRAAEPEPRPARKA
TQSEPAEPEGRRRRRSVRQAAGGFSAPAPAEGDAPRRTARPAVATFQAPVFTEPRFQTPQ
RAAAEAAAQAAGVREPEQAEETEQAEQVEKAVAATPAPEAAATDERDNGRRRRRRRGAPA
EETRAVEEKPEPVEEPVEDEGDDSDDAEGSDDSGSRRRRRRGGRRRRRGDAYDGDDNGEN
SDDAESGELAAEQAEQDAEDTAEQEEEDAEDTDDARGEESGGSSSSRRRRRRRRRAGDSG
GDAEPASGDDPERTVVKVREPRKAAEPSDEVQSIKGSTRLEAKKQRRREGREQGRRRVPI
ITEAEFLARREAVERVMVVRQHGERTQIGVLEDGVLVEHYVNKEQATSYVGNVYLGKVQN
VLPSMEAAFIDIGKGRNAVLYAGEVNFEALGMANGPRRIESALKSGQPVLVQVTKDPIGH
KGARLTSQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKTILKKIVPEDAGVIVRTAAE
GASEDELRRDVERLQAQWEEIKKKAKTGNAPALLYGEPDMTVRVVRDIFNEDFSKVIVSG
DEAWSTIHGYVSHVAPDLTDRLQKWTGEADVFATYRIDEQLAKALDRKVWLPSGGSLVID
RTEAMVVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIIVIDFIDMVLE
SNRDLVLRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSENCVHCNGRGVI
VHMEQPTSVGGGGGGKRKKRGRGDGQGHEHESAAPVETETVAEVTAEAAEPVALPEPDFT
PDEELYSSVAEAEAAAGRGRSRRKAGRRASAPAGAPKEGSRRSTERAERFERAAEEAPTA
ASVTAEETAAAPVLPEPATEAHAEPMAAEDPVVAPEPAAEEAAPKGRARRRVTRKVSAPA
GSPAGAEAAVVTVAESAPVAEPEQLPEAAPAAEESAAPARPRRRAVRKATAPTASEETAV
LVVPSSAPEPAATEEPATEEPAAEAESEEAAPAKKTARKAAKKAPAKKTAAKKTTAAKKT
TAAKKTAAKTTTAKKTTAKKAATKTAKTAAKSTARKTAKVSAPDDES
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
ctgcccccgcgcaggcgtcgccgggccgcgtcccgcccggcgggtgcgcccgccgccggc
agcggcaccgagaccaccgcgcagcccgaggccaccgccccggcagcgcaatccgggact
tcaggggccaccgagccccccgccgagacggcaccgcgcccgcgccgccgcagcacccgc
cgcgcctccgcgcccgccgggaccccgacggccgccgaggccgccaccgtcaccgagccg
gccgtaccggccgcgtccgccgacgaacaggccgacgccgccgccgagaccaccgcaccc
gcgccgcgccgcacccgccgcagggcctccgcgcccgccggggcgcccacgcaggtcacc
gccgaggacaacaaggccgaggaggccgacgtggcccaggacaccgaggacaacaaggcc
gccgagccggccgagtccgccaccgagacccccgccgcgcgcccgcgccgccgtgccacc
cggcgcgcctccgccccggccggcgcgccgaaggccgccgaggcgtccgaggcgtccgag
acggagaagcccgccgagccggcgccggccgccgagacggagacggagacggagaccgag
gttccggccgcgcgtccgcgccgtcgggccacccgccgtgcctccgcgccggccgccgag
gccgctgtcgccgagacccccgccgcccaggccgagcccgaggccgagccggccccggcc
gccgagcccgaggccgctccggccggtcgtacgcgccgtcgcgcgacccgtcgtgtctcc
acgcccaccgagaccccgcccaccgagaccccggccgccgagaccccggccgtcgagacc
ccggccgtcgaggcgcccgccgctgaggccgaggcccagccggccgccgagccggtcgcc
gagaccgaggccgcccccggccgtgcccgccgtcgcgccacccgccgggcctccgcgccc
gccggtgccccggccgccgccgaggagaaggccgaggcgaaggccgaggacaagcccgcg
gacaagcccgcggacaagccccgggccgccgagcccgagccgcgccccgcccgcaaggcg
acgcagtccgagccggccgagcccgagggccgccgccgtcgccgctccgtgcgccaggcc
gcgggcgggttctccgcgcccgcccccgccgagggcgacgccccccgccgtaccgcccgg
cccgccgtggccaccttccaggcgccggtcttcaccgagcccaggttccagaccccgcag
cgcgccgccgccgaggccgcggcccaagccgccggtgtccgggagccggagcaggcggag
gagaccgagcaggccgagcaggtcgagaaggccgtggcggccacccccgcccccgaggcc
gctgccaccgacgagcgtgacaacggtcgccgtcgccgtcgccgccgtggcgcccccgcc
gaggagacccgcgcggtcgaggagaagccggagcccgtcgaggagcccgtcgaggacgag
ggcgacgactccgacgacgccgagggctcggacgactccggttcgcgccgccgtcgccgc
cggggcggccgtcgccgccgccgtggcgacgcctacgacggtgacgacaacggcgagaac
tccgacgacgccgagtccggcgagctggccgccgagcaggcggagcaggacgccgaggac
accgccgagcaggaggaagaggacgccgaggacaccgacgacgcccggggcgaggagtcc
ggtggctccagctccagccgtcgccgccggcgccgtcgccgtcgcgccggggactccggt
ggcgacgccgagccggcgtccggggacgaccccgagcgcaccgtcgtcaaggtccgcgag
ccccgcaaggccgccgagccgtccgacgaggtccagtccatcaagggctcgacccgcctg
gaggccaagaagcagcgccgccgcgagggccgcgagcagggccgccgccgcgtgccgatc
atcacggaggccgagttcctggcccgccgcgaggccgtcgagcgggtgatggtcgtgcgc
cagcacggcgagcgtacccagatcggcgtcctggaggacggcgtgctcgtcgagcactac
gtcaacaaggagcaggccacctcgtacgtcggcaacgtctacctgggcaaggtccagaac
gtgctgccgtccatggaggccgccttcatcgacatcggcaagggccgcaacgccgtgctg
tacgccggtgaggtcaacttcgaggcgctcggcatggccaacgggccgcgccgcatcgag
tccgccctcaagtccggccagccggtcctggtccaggtgaccaaggacccgatcggccac
aagggcgcccgcctcaccagccaggtctcgctgccgggccgctacctcgtgtacgtcccc
gagggctcgatgaccggcatcagccgcaagctgcccgacaccgagcgggcccggctgaag
accatcctcaagaagatcgtccccgaggacgcgggcgtcatcgtgcgcaccgccgccgag
ggcgcgagcgaggacgagctgcgccgtgacgtcgagcggctccaggcgcagtgggaggag
atcaagaagaaggcgaagacgggcaacgccccggcgctgctgtacggcgagccggacatg
accgtccgcgtcgtccgcgacatcttcaacgaggacttctccaaggtcatcgtcagcggt
gacgaggcgtggtcgaccatccacggctacgtctcccacgtcgcccccgacctcaccgac
cggctccagaagtggaccggtgaggccgacgtcttcgccacctaccggatcgacgagcag
ctcgccaaggcgctggaccgcaaggtctggctgcccagcggcggttcgctggtgatcgac
cggaccgaggcgatggtcgtggtcgacgtcaacaccggcaagttcaccggccagggcggc
aacctggaggagacggtcaccaggaacaacctggaggcggccgaggagatcgtgcgccag
ctccggctgcgcgacctcggcggcatcatcgtcatcgacttcatcgacatggtgctggag
tccaaccgggacctggtgctgcgccgtctgctggagtgcctgggccgggaccggaccaag
caccaggtggccgaggtgacctcgctgggcctggtgcagatgacccgtaagcgggtcggc
cagggcctgctggagtccttctccgagaactgcgtccactgcaacggccgcggtgtcatc
gtgcacatggagcagcccacctccgtcggaggcggcggtggcggcaagcgcaagaagcgc
ggccgcggcgacggccagggccacgagcacgagagtgccgcgccggtggagaccgagacg
gtcgccgaggtgaccgccgaggccgccgagccggtcgcgctgcccgagccggacttcacc
ccggacgaggagctgtacagctccgtcgccgaggcggaggccgccgccggacgcgggcgt
tcgcgccgcaaggccggccgccgtgcctcggccccggccggtgcgcccaaggagggcagc
cgccgttccaccgagcgggccgagcggttcgagcgggccgccgaggaggcgccgaccgcc
gcgtcggtgaccgccgaggagaccgccgccgccccggtgctgccggagccggccaccgag
gcgcacgccgagccgatggccgccgaggacccggtcgtcgcgccggagcccgccgccgag
gaggccgcgcccaagggccgcgcccgtcgccgggtcacccgcaaggtgtccgcgcccgcc
ggttcgccggccggggccgaggccgccgtggtgaccgtcgcggagtccgcgccggtggcc
gagccggagcagctgccggaggccgccccggcggccgaggagagcgccgccccggcccgt
ccgcgccgccgcgcggtgcgcaaggccaccgcgccgaccgcgtcggaggagacggccgtg
ctggtcgtcccgtcgtccgcgccggagccggccgccaccgaggagcccgccaccgaggag
cccgccgccgaggcggagtccgaggaggccgcgcccgccaagaagaccgcccgcaaggcg
gccaagaaggcaccggcgaagaagacggccgcgaagaagaccacggccgccaagaagacg
acggccgcgaagaagacggccgccaagacgacgacggcgaagaagacgacggccaagaag
gcggccaccaagaccgccaagacggccgccaagtcgacggcgaggaagaccgccaaggtc
tccgcgccggacgacgagagctga
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