Streptomyces seoulensis: D0Z67_19895
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Entry
D0Z67_19895 CDS
T07029
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sseo
Streptomyces seoulensis
Pathway
sseo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sseo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
D0Z67_19895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sseo03400
]
D0Z67_19895
Enzymes [BR:
sseo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
D0Z67_19895
DNA repair and recombination proteins [BR:
sseo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
D0Z67_19895
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
SPOR
Motif
Other DBs
NCBI-ProteinID:
QBJ92330
UniProt:
A0A4P6TXV9
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All DBs
Position
complement(4251467..4252348)
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AA seq
293 aa
AA seq
DB search
MTPVTEVEGRRVSLSNLEKVLYPETGFTKGELLHYYATAAGALLPHLRDRAVSFLRYPDG
AGGEAFFTKNVPPGTPDWVTTAEVPRSAGAARMVVVQDLPSLMWAANLVTEFHTHQWLVQ
IPDEADRLVFDLDPGAPATVVHCCEVALWLRERLAADGIEAYAKTAGSKGLHLLASVRGA
SSAEASDYAKALAKEAERAMPGLVLHRMTRSLRPGKVFVDWSQNAARKTTAAPYTVRARS
TPTVSTPVTWDEVERCRDPAELTFLAGDVPPRLERYGDLLAGLLDPERAAPLP
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgacgccagtgacggaggtggaggggcggcgggtctcgctcagcaacctggagaaggtg
ctgtacccggagaccggcttcaccaagggcgagctgctgcactactacgccaccgccgcc
ggggcgctgctgccgcatctgcgggaccgggcggtgtccttcctgcggtatccggacggc
gccggcggggaggcgttcttcaccaagaacgtgccgccgggtacgcccgactgggtcacc
acggccgaggtcccccgttcggcgggcgcggcccggatggtggtggtgcaggacctgccg
agcctgatgtgggcggcgaacctggtgaccgagttccacacccaccagtggctggtccag
atcccggacgaggccgaccggctggtgttcgacctcgatcccggcgcgcccgcgacggtc
gtccactgctgcgaggtcgccctgtggctgcgggagcggctcgcggcggacgggatcgag
gcgtacgccaagaccgccgggtccaaggggctgcatctgctggcctcggtgcggggcgcg
tcctcggccgaggcgagcgactacgccaaggcgctcgcgaaggaggcggagcgggcgatg
ccggggctggtgctgcaccggatgacccggagcctgaggccgggcaaggtgttcgtcgac
tggagtcagaacgcggcccgcaagaccaccgccgccccctacaccgtgcgcgcccgcagc
accccgaccgtctccacccccgtcacctgggacgaggtcgagcgctgccgcgacccggcc
gagctgacgttcctcgccggggacgtcccgccgaggctggagcggtacggggacctgctg
gcgggcctgctggacccggagcgggcggcaccactcccctga
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