Selenomonas sputigena: Selsp_1096
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Entry
Selsp_1096 CDS
T01474
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssg
Selenomonas sputigena
Pathway
ssg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Selsp_1096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssg03400
]
Selsp_1096
Enzymes [BR:
ssg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Selsp_1096
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Selsp_1096
DNA repair and recombination proteins [BR:
ssg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Selsp_1096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CoaE
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
AAA_33
AAA_18
AAA_16
NFACT_N
ANTAR
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
AEC00056
UniProt:
C9LUL4
LinkDB
All DBs
Position
1228362..1229795
Genome browser
AA seq
477 aa
AA seq
DB search
MPELPEVETIRRSLEKVAAGRRITEVDVLLPRTIRFPEVEAFRSRVRGQRILCLERRGKY
LMLPLESGETLLLHLRMTGRFYRRDADTPTGRHVRAIFHLDDGSCLFFEDVRTFGEIHLL
QPQERKAFPAFSCMGPEPLTEEFDASYLYDAMQKSSQRIKSFLLDQGKVAGLGNIYVDEA
LFFAGVHPLRRAHTLNHDEAFRLWQAINKVIAEGIEDGGTTFRDYVDGEGKSGFHQQKLR
VYHREGEPCLVCGTKIEKIRVGGRGTHFCPHCQPLRDGKLRLIGLTGVIASGKSTVSRQL
MKLGAHVIDTDKIAHNLAKPHKPLWDAYREHFGEEILAEDGSLCREKIAARVFSDPEERR
WIDGAAHPLIASSVRKKIAALEKKGAKIIFLDVPLLFEAGWNRMADFIWLVSVSKETQLA
RLMKRNGYTEEEAAARIRSQFPLEEKRQRADCIIENDGTLQETAAQAAAAWERLSAL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcccgaagttgaaaccatacggcgttctttggaaaaagttgcggcggga
cggcgtatcacggaggtcgatgtgcttctgccgcgaacgataagattcccagaggtcgag
gcgttccgctcgcgtgtgcgcgggcagcgcatcctttgcttggagcggcgcggcaagtat
ctgatgctgcctctggagagcggggaaaccttgctgctccatctgcgcatgacgggacgc
ttttatcggcgcgatgccgacacgccgaccggcagacatgtgcgtgccatctttcatctg
gacgatggaagttgtctcttttttgaagacgttcggacattcggcgagatccatctgctg
cagccgcaggaaaggaaggcgtttcctgcattttcctgcatgggaccggagcctttgacc
gaggaatttgatgcatcgtatttatatgacgccatgcagaagagcagtcagcgcatcaag
agctttttgctcgatcagggcaaggtggcgggacttggcaatatctatgtcgatgaagcc
ttgttctttgcaggcgtccatcctctgcgaagagcgcatacgctgaatcacgacgaggca
ttccgtctttggcaggcgatcaacaaggtcatcgctgaaggcatcgaagacggcggcacg
acgtttcgcgactatgtggacggcgagggcaagtcgggcttccatcagcaaaagctgcgc
gtctatcatcgggaaggagagccgtgcctcgtctgcggcacaaagatcgagaagattcgt
gtgggcgggcgcggcacgcacttctgcccgcattgtcagccgctgcgcgacggcaagctg
agattgatcggcttgactggcgtcatcgcgagcggcaagagcacggtcagccgccagctc
atgaagcttggcgcacacgtcattgataccgataagatcgcgcacaatctggcgaagccg
cacaaacctctttgggacgcctatcgcgagcatttcggtgaagagatcttggccgaggac
ggcagtctttgccgcgaaaagattgcggcgcgagtgttttccgatcccgaggagcggcgc
tggatcgatggggcggcacatccgttgattgcttcaagcgtgaggaaaaagattgccgct
ctcgagaaaaagggcgcaaaaatcatctttctcgatgtgccgctgctctttgaggcgggt
tggaatcgcatggcagatttcatctggctcgtctctgtgtcgaaggagacgcagctggcg
cgtctgatgaagcgcaacggctatactgaggaggaagcggcggcaaggattcgctcgcaa
tttccgttggaggagaaaaggcagcgtgccgactgcatcatcgagaacgatggcacgctg
caagagacggctgcgcaggcagcggcggcatgggaaaggctgtcggcgctttga
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