Selenomonas sputigena: Selsp_1555
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Entry
Selsp_1555 CDS
T01474
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssg
Selenomonas sputigena
Pathway
ssg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Selsp_1555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssg03019
]
Selsp_1555
03400 DNA repair and recombination proteins [BR:
ssg03400
]
Selsp_1555
Enzymes [BR:
ssg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Selsp_1555
Messenger RNA biogenesis [BR:
ssg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Selsp_1555
DNA repair and recombination proteins [BR:
ssg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Selsp_1555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
AEC00512
UniProt:
C9LT53
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All DBs
Position
1710918..1712699
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AA seq
593 aa
AA seq
DB search
MPEQNFARALQILQQTFGYKSFRPAQETVVKSLLEGRETVAIMPTGAGKSICFQVPALLL
PGVTLVISPLISLMKDQVDALTEAGAPATFINSSLGQAEARARLSAIARGAYKIVYVAPE
RLETDFFQSLLQEQTVSFIAIDEAHCLSQWGHDFRPSYRAIAPFIECLPKRPLIGAFTAT
ATPRVKDDIISLLALRRPAVHVAGFDRPNLFFGVLTGVDRKDFIANYLRTHREEAGIIYC
ATRKETDALSRFLQQKKFAVRPYHAGLCDEERSKAQDDFLYDNVQAIVATNAFGMGIDKS
NVRFVIHYNMPKNIESYYQEAGRAGRDGEPGECILLFSPQDVMTQKYLIDISTEDAARKA
HELGCLQKMSDYCHTPECLRSFILRYFGEESPAASCERCSSCKGDFERRDVTLDAQKIFS
CVYRMRGRYGMTLTAQVLKGSAEQRVRTLHLDELSTYGIMQEQPLAEIKRSIQRFIATGY
LSLTESEYPVLQLAEPAYAVLRGKEQVFQNFPRKQKEKPVDISLFDYLRALRKELAARDR
VPPYVIFSDATLRDMCQVLPETLDDFLHVKGVGERKCERYGEAFLACIKEHRT
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagcaaaacttcgcccgtgcgctgcagatcctgcagcagaccttcggctacaag
agcttccgccccgcgcaggagaccgtcgtcaagagcctgctcgaaggccgcgagaccgtc
gccatcatgcccacgggcgcgggaaagtccatctgcttccaagtgcccgccctgctgctc
ccgggcgtcacactcgtcatctcgcccttaatctcgctgatgaaggatcaagtcgacgcg
ctcacggaagccggtgcgcccgcgacattcatcaacagctcgcttggacaggcggaagct
cgcgcaaggctcagcgccatcgcgagaggcgcgtacaaaatcgtctatgtcgcgcccgag
cggcttgaaaccgacttcttccaatctctgctgcaagagcagaccgtttccttcatcgcc
atcgacgaggcacactgcctgtcgcagtgggggcacgacttccgcccgagctatcgcgcc
atcgcgcccttcatcgaatgtttgccgaagcgccccttgatcggcgccttcacggcgacg
gcgacgccgcgcgtcaaggacgatatcatctctctcctcgcgcttcgccgccccgccgtg
cacgtcgcgggcttcgaccggccgaatctcttcttcggcgtcctcacaggcgtcgaccgc
aaggacttcatcgcgaactacctgcgcacgcatcgcgaagaagccggcatcatctactgt
gcgacgcgcaaggagacggacgccctgagccgcttcctgcagcaaaaaaaattcgctgtg
cgtccctaccatgcgggactctgcgacgaagagcgctcgaaggcgcaggacgacttcctc
tacgacaacgtgcaggcgatcgtcgcgacgaacgccttcggcatgggcatcgacaagtcg
aacgtgcgcttcgtcatccactacaacatgccgaaaaacatcgagtcgtactatcaggag
gcgggacgcgcgggacgcgacggcgagccgggcgaatgcatcctgctcttctcgccgcag
gacgtcatgacgcagaagtacctgatcgacatctcgaccgaggatgccgcgcgcaaggcg
cacgaactcggctgcctgcaaaagatgtccgactactgccacacgcccgaatgcctgcgt
tccttcatcctgcgctacttcggcgaagaaagccccgccgcctcgtgcgagcgctgcagc
agctgcaagggcgacttcgaacggcgcgacgtgacgcttgatgcgcagaaaatcttctcg
tgcgtctaccgcatgagaggacgatacggcatgacgctgacagcgcaggtgctcaaaggc
tctgccgagcagcgcgtgcgcacgctgcacctcgacgaactgtcgacctacggcatcatg
caggagcagccgctcgccgagatcaagcgctcgattcaacgctttatcgccacgggctat
ctctcgctcaccgagagcgaataccccgtgctgcagctcgcagagcccgcctacgccgtg
ctgcgcggcaaggagcaggtattccaaaacttcccccgaaagcagaaggaaaagcccgtc
gacatctcgctcttcgactacctccgagcactcaggaaagagctagccgcacgcgaccgc
gtgccgccctacgtcatcttctccgatgcgacgctgcgcgacatgtgccaagtgctgcca
gaaacgctcgacgacttcctgcacgtcaagggtgtcggcgaaagaaaatgcgagcgttac
ggcgaggctttcctcgcgtgcatcaaagagcatcgcacataa
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