Staphylococcus schweitzeri: NCTC13712_00751
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Entry
NCTC13712_00751 CDS
T06947
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssh
Staphylococcus schweitzeri
Pathway
ssh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13712_00751 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssh03019
]
NCTC13712_00751 (rnr)
03016 Transfer RNA biogenesis [BR:
ssh03016
]
NCTC13712_00751 (rnr)
Enzymes [BR:
ssh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
NCTC13712_00751 (rnr)
Messenger RNA biogenesis [BR:
ssh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC13712_00751 (rnr)
Transfer RNA biogenesis [BR:
ssh03016
]
Prokaryotic type
tRNA degradation factors
NCTC13712_00751 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_HELZ2
S1CSD-TOTE-2
Rho_RNA_bind
OB_Dis3
RNase_II_C_S1
S1_RRP5
OB_RNR_1st
HemN_C
Motif
Other DBs
NCBI-ProteinID:
VEE65345
LinkDB
All DBs
Position
1:810839..813211
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AA seq
790 aa
AA seq
DB search
MNLKQSIENIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERTKTDRY
QKKHNSKGHSKLIKGTLSQNKKGFAFLRPENEEMEDIFIPPTKINRALDGDTVVVEIHQS
KGEHKGKIEGEVKSIEKHSVTQVVGTYSEARHFGFVIPDDKRIMQDIFIPKGQSLGAVDG
HKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDDVLHEAEAVP
NHIENNEIKGRHDLRDELTITIDGADAKDLDDAISVKKLSNGHTELTVSIADVSYYVTED
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDDSGRVVKHE
IFDSVIHSNYRMTYDAVNQIITEKDSTIREQYNEITPMLDLAQDLSNRLIQMRKRRGEID
FDISEAKVLVNEDGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQ
PKTDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELA
EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI
ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDR
SQRPARGKTIQAKTRGKSLDKSKSDDKGHKKKGKQRKGKNQRNNDKSGNSKHKPFYKDKS
VKKKARRKKK
NT seq
2373 nt
NT seq
+upstream
nt +downstream
nt
atgaatttaaagcaatcaatagaaaacattattaatcaacctgaatatgaaccgatgtct
gtgtcagattttcaagatgcattaggtttaagtagtgccgactcatttagagatttaatt
aaggtgcttgtagaattagaacaatcaggattaattgaacgtacaaaaacagatagatac
caaaaaaagcataattcgaaaggtcattcgaaattaattaaaggaacattaagccaaaat
aaaaaaggttttgcattcctaagacctgaaaatgaagaaatggaagatatatttattccc
ccaacgaaaattaatagagccttagatggagatactgtagttgtagaaatacatcaatct
aaaggtgaacataaaggtaagattgaaggggaagttaaatcaattgaaaaacattctgta
acacaagttgttggcacgtatagtgaagcaagacatttcggttttgtaattccagatgat
aaacgtattatgcaagatatttttattcctaaaggccaaagtttaggtgcagttgatggt
cataaagtgcttgttcaaatcactaagtatgctgatggttcagataatcctgaagggcat
atttcagcaattttaggacataaaaatgatccaggtgtagatattttatctataatttat
caacacggtattgaaattgaatttccagatgatgtattacatgaagctgaagcagtacct
aatcatattgaaaataatgaaattaaaggtcgtcatgatttacgtgatgaattgactatc
actattgatggtgcggatgctaaagacttagatgatgcaatcagtgttaaaaagttgtca
aatggtcatacggagttaacggttagtattgctgatgtcagctattatgtaactgaagat
tcagctttagataaagaagcttatgatagagctacaagtgtttatcttgttgaccgagtg
attccgatgattccacatcgattaagcaatggtatttgttcgttaaatcctaatgttgat
cgtttaacgttaagttgtcgcatggaaattgatgatagtggtcgcgttgtaaaacatgaa
atctttgatagtgtgattcattctaattatcgaatgacgtatgatgcggtaaatcagatt
attactgaaaaggattctacgattcgagagcagtataatgaaattacgcctatgctagat
ttagcacaagatttatcaaatcgtttaattcaaatgagaaaacgccgtggtgaaattgat
tttgatattagcgaagcgaaagtactagttaacgaagatggtatacctacagatgttcaa
ttgagacaacgtggtgaaggcgaacgtcttattgagtcatttatgttaattgcaaatgaa
acagttgctgaacattttagtaagttagacgtaccatttatttatcgtgtacatgagcag
cctaaaacagatcgcttaagacaattctttgattttattacaaactttggcattatgatt
aaaggtactggcgaagatatacaccctacaacacttcaaaaggttcaagaagaagtagag
gggcgcccagaacaaatggtcatttcaacaatgatgttacgttcaatgcaacaagcgcat
tatgatgatgtaaacttaggtcatttcggcttatcagctgaatattatacacatttcaca
tcacctattagacgttatcctgacttaactgttcatcgattaatccgtaagtatttaatt
gaaaaatcaatggataataaagaagtgaagcgttgggaagacaaattgcctgagttagct
gagcatacttctaaacgtgaacgtcgtgctattgaagcagaacgtgatactgatgaattg
aaaaaagctgaatatatgattcaacatattggcgatgagtttgaaggtattgtcagctct
gttgcgaactttggtatgttcattgaattaccaaatacgattgaaggtatggttcatatt
gcaaatatgaccgatgattattatcgttttgaagagcgtcaaatggcattaattggtgaa
cgtcaagctaaagtatttagaattggtgacacagtgaaagttaaagtgacgcacgtagat
gtagatgaacgcttaattgattttcaaattgttggtatgcctttaccgaaaaatgatcga
tcacagcgcccagcgcgaggtaagaccattcaagctaaaacgcgtggtaaatcgttagat
aaatcgaaatctgatgataaaggtcataagaaaaaaggtaagcaacgtaaaggtaaaaat
caacgtaataatgacaaatctggaaacagtaagcataagccattttataaagataaaagt
gtgaaaaagaaagcacgtcgtaagaaaaaataa
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