Staphylococcus schweitzeri: NCTC13712_02022
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Entry
NCTC13712_02022 CDS
T06947
Name
(GenBank) Probable DEAD-box ATP-dependent RNA helicase SA1885
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssh
Staphylococcus schweitzeri
Pathway
ssh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13712_02022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssh03019
]
NCTC13712_02022
03009 Ribosome biogenesis [BR:
ssh03009
]
NCTC13712_02022
Enzymes [BR:
ssh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13712_02022
Messenger RNA biogenesis [BR:
ssh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13712_02022
Ribosome biogenesis [BR:
ssh03009
]
Prokaryotic type
rRNA helicases
NCTC13712_02022
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_30
Flavi_DEAD
vATP-synt_E
DeaD_dimer
Motif
Other DBs
NCBI-ProteinID:
VEE66537
LinkDB
All DBs
Position
1:complement(2103454..2104974)
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AA seq
506 aa
AA seq
DB search
MQNFKELGISDNTVQSLESMGFKEPTPIQKDSIPYALQGIDILGQAQTGTGKTGAFGIPL
IEKVVGKQGVQSLILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGP
QIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAAQRQTML
FSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELEKFDTFTNFLDVHQP
ELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQINILVATDVA
ARGLDISGVSHVYNFDIPQDTESYTHRIGRTGRAGKEGIAVTFVNPIEMDYIRQIEDANG
RKMSALRPPHRKEVLQAREDDIKEKVENWMSKATESRLKRISTELLNEYNDVDLVAALLQ
ELVEANDEVEVQLTFEKPLARKGRNGKPSGSRNRNNKRGNHKFDGKSKRSKGYSSKKKGN
KKFDRKDNNSGGSRPMKGRTFADHQK
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
ttgcaaaattttaaagaactagggatttcggataatacggttcagtcacttgaatcaatg
ggatttaaagagccgacacctatccaaaaagacagtatcccttatgcgttacaaggaatt
gatatccttggacaagctcaaaccggtacaggtaaaacaggagcattcggtattccttta
attgaaaaagtagtagggaaacaaggggttcaatcgttaattttagcacctacaagagaa
ttggcaatgcaggtagctgaacaattaagagaatttagccgtggacaaggtgtccaagtt
gttactgtattcggtggtatgcctatcgaacgccaaattaaagccttgaaaaaagggcca
caaatcgtagtcggaacacctggacgtgttatcgatcatttaaaccgtcgtactttgaaa
actgatggtatccatacattaattttagacgaagcagatgaaatgatgaacatgggattc
atcgacgatatgagatttattatggataaaattcctgctgcgcaacgtcaaacaatgcta
ttctcagcaactatgcctaaagcaattcaagctttagtgcaacaattcatgaagtcacct
aaaattattaagacaatgaataatgaaatgtcagatccacaaatcgaagaattctataca
attgttaaagaattagagaaatttgatacatttacaaatttcctagatgttcatcaacca
gaattagcaatcgtatttggacgtacaaaacgtcgtgttgatgagttaacaagtgctttg
atttctaaaggctataaagctgaaggattacatggtgatatcacacaagcgaaacgttta
gaagtattaaagaaattcaagaatgaccaaatcaatattttagtcgctacagatgtagca
gcaagaggactagatatttctggtgtaagtcatgtttataactttgatattcctcaagat
actgaaagctatacacaccgtattggtcgtactggtcgtgctggtaaagaaggtatcgcg
gttacttttgtaaatccaatcgagatggattacattagacaaatcgaagatgcaaacggt
agaaaaatgagtgcattacgtccaccacaccgcaaagaagtacttcaagcacgtgaagat
gatattaaagaaaaagttgaaaactggatgtcaaaagccacagaatcacgtttaaaacgt
atttcaactgaattattaaatgaatataacgatgttgatttagttgctgcacttttacaa
gagttagtagaagcaaacgacgaagttgaagttcaattaacttttgaaaaaccattagct
cgtaaaggccgtaatggtaaaccaagtggttctcgtaacagaaacaacaaacgtggtaac
cataaatttgacggtaagagtaaacgttcaaaaggttactcaagcaagaaaaaaggcaac
aaaaaattcgaccgcaaagacaacaatagtggtggaagtagacctatgaaaggtcgcaca
tttgctgaccatcaaaaataa
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