Saccharolobus shibatae: J5U23_00030
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Entry
J5U23_00030 CDS
T07357
Name
(GenBank) DNA-directed RNA polymerase subunit B''
KO
K13798
DNA-directed RNA polymerase subunit B [EC:
2.7.7.6
]
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5U23_00030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sshi03021
]
J5U23_00030
Enzymes [BR:
sshi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5U23_00030
Transcription machinery [BR:
sshi03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
J5U23_00030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
RNA_pol_Rpb2_45
Filamin
DUF4817
Motif
Other DBs
NCBI-ProteinID:
QXJ27176
UniProt:
B8YB55
Structure
PDB
PDBj
LinkDB
All DBs
Position
25911..29297
Genome browser
AA seq
1128 aa
AA seq
DB search
MSSNLSIDERWKVIEAYFKSKGLVRQHLDSYNDFVRNKLQEIIDEQGEIPTEIPGLKVRL
GKIRIGKPRVRESDRGEREISPMEARLRNLTYAAPLWLTMIPVENNIEAEPEEVYIGDLP
IMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERVIVTQEDLAPNRVLVDTGKTG
SNITHTAKIISSTAGYRVPVTIERLKDGTFHVSFPAVPGKIPFVILMRALGILTDRDIVY
AVSLDPEIQNELFPSLEQASSIANVDDALDFIGSRVAIGQKRENRIEKAQQIIDKYFLPH
LGTSADDRRKKAYYLAYAISKVIELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKA
FVKDLTYQLEKSKVRGRKLALKALVRPDIVTERIRHALATGNWVGGRTGVSQLLDRTNWL
SMLSHLRRVISSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGI
NEKIVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDGEELAKKI
RERRRKGEISDEVNVGHIVTDFINEVHVNCDSGRVRRPLIIVSNGNPLVTREDIEKLDSG
SITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSPAILGITASIIPYPEH
NQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQTRALDIIGYTNRPAGN
NAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKYPGGQEDKIVMPEPGV
RGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSIVTR
HGEMGIVDLVLITETAEGNKLVKVRVRDLRIPSIGDKFASRHGQKGVIGMLIPQVDMPYT
VKGVVPDVILNPHALPSRMTLGQIMEGIAGKYAALSGNIVDATPFYKTPIEQLQNEILKY
GYLPDATEVTYDGRTGQKIKSRIYFGVVYYQKLHHMVADKIHARARGPVQILTRQPTEGR
AREGGLRFGEMERDCLIGFGTAMLLKDRLLDNSDRTTIYVCDQCGYIGWYDKNKNKYVCP
IHGDKSNLFPVTVSYAFKLLIQELMSMIISPRLILEDRVGLSGGKGNE
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatctaatttaagcattgatgaaagatggaaagttattgaagcctactttaaatcc
aagggcttagttagacagcatctggattcatacaatgactttgttagaaacaagcttcaa
gagatcattgatgagcaaggagaaataccgacagaaattccaggtttgaaagttagatta
ggcaagataagaataggaaaaccaagagttagggaatcagataggggagaaagggagatc
agcccaatggaggctagattaaggaacttgacttatgctgctccactatggcttacaatg
attccagttgaaaacaatattgaagcagaaccagaggaggtttatataggagacttacct
ataatgcttaaatcagcaatagatccaatatcacagtatactctagataagctaattgag
ataggtgaggatcctaaagaccctggaggttacttcatagtaaatgggtccgaaagggtt
atagtaactcaagaagatttagctccaaatagagttcttgtagataccggaaagacggga
tcaaatatcacgcatacagcgaaaattatctcgagtaccgcaggctacagagtacctgtt
acgatagaaagactaaaagatggtacatttcacgtatcatttccagcagttccaggtaaa
attccgtttgttattctaatgagagcacttggtatattaaccgacagggacatagtatac
gcagtatcattagatcctgagattcagaatgaattatttccctctttagaacaagcaagt
tctatagctaatgttgatgatgcgctagattttataggtagtagagtagccataggccaa
aagagagagaataggatagaaaaagcacaacaaataattgataaatacttcctacctcat
ttaggaacttcagcagacgatagaagaaagaaagcatattatttggcttatgctatatcg
aaagttattgaactatatctaggcagaagggaacctgatgataaagatcattacgctaat
aaaagattaagattagccggagatttattcgcgtcattatttagagtagctttcaaagct
ttcgtaaaagatttgacataccaattagaaaaatctaaggtaagaggtaggaagctagct
ttaaaggcattagttagaccagatatcgtaacagaaagaataaggcacgcattagctact
gggaactgggttggtggaagaactggagttagccaattacttgatagaactaactggctt
tctatgttaagccatctgaggagagtaatatcctcattagcaaggggtcaacctaatttc
gaggctagagatttacatggtacgcaatggggtaggatgtgtccctttgaaacaccagaa
ggtccaaatagtggactagttaagaatttagcgttaatggctcaaattgcagtaggaata
aatgagaagattgtggaaaaaacactatacgaaatgggagtagttccggtggaggaggtt
ataagaagagtaacggaaggcggggaggatcagaatgaatatctaaaatggtctaaagtt
atacttaacggaagattagtaggctattatcgagatggggaagaattagccaagaagatc
agggaaagaaggagaaaaggagaaattagtgatgaggtaaatgtaggtcatatagttaca
gatttcattaatgaagttcatgtaaattgtgattctggaagagttagaaggccacttata
attgtttctaacggtaacccgttggtaactagagaagatattgaaaagttagactctggt
tctattacctttgacgatcttgttagacaagggaagatagagtatttagatgcggaagaa
gaggagaacgcttatgttgctttagaacctagtgacttaactccagagcatactcattta
gagatatggtctccagctattttgggcataacagcgtctataataccttacccagaacat
aatcaatctcctagaaatacatatcagtcagctatggcgaaacaagctttaggtctatat
gcagcgaattatcagttacgtacggatacaagagctcatttactccattacccgcaaaga
cctttagttcaaactagggcattagatattataggctatacgaatagaccagccggaaat
aacgctatcctagctgtaatatcatttactggatacaatatggaagattcaataattatg
aatagatcctccgttgagagaggaatgtataggtctacattctttagactttactcaacg
gaggaggtaaaatatcctggaggtcaagaagacaaaatagtaatgccggaaccaggtgtt
agaggatataaaggcaaagaatactatagacttctagaggacaacggagtagtctcacct
gaggtcgaagtgaaaggaggagatgtattgataggtaaagttagtcctccgagattctta
caagaatttaaagaattatctccagagcaagctaagcgtgatacctcaatagttactaga
catggtgaaatgggtatcgtagatttagttttaattactgaaaccgcggagggcaataag
ctagttaaggtaagagtaagagatcttagaataccttcaataggtgataaattcgccagt
agacatggacaaaaaggtgttattggaatgcttataccacaagttgatatgccatatact
gttaaaggtgtagtgcctgatgtaatattaaatcctcacgcgttgccatctagaatgaca
ttaggccaaattatggaaggaatagctggtaaatatgcggcattatctgggaatattgta
gatgctacgcctttctacaagacacctatagaacaactacaaaatgagattttgaaatat
gggtatttaccagacgctaccgaagttacgtatgatggtcgtactggacagaaaattaaa
tctagaatatactttggagtagtgtactatcagaaattgcatcacatggtagcagataag
attcacgccagagctaggggtccagtccaaattttaacaagacagccaactgaaggaaga
gcaagagagggtggtttaagatttggagaaatggaaagagattgtttaattggttttggt
actgcaatgctccttaaggataggttattagataactctgataggacaacaatttacgtt
tgcgatcaatgcggttatataggttggtacgataagaataagaataaatatgtatgtcca
atacatggtgataagagtaacttgttcccagttactgtatcttatgcatttaagctttta
attcaagaattaatgagtatgattatctcacctagattaattttagaggatagggttgga
ttgagtgggggtaaaggaaatgagtga
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