Saccharolobus shibatae: J5U23_00031
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Entry
J5U23_00031 CDS
T07357
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J5U23_00031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sshi03021
]
J5U23_00031
Enzymes [BR:
sshi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J5U23_00031
Transcription machinery [BR:
sshi03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
J5U23_00031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
Zn_ribbon_3
Motif
Other DBs
NCBI-ProteinID:
QXJ27177
UniProt:
B8YB53
Structure
PDB
PDBj
LinkDB
All DBs
Position
29290..31932
Genome browser
AA seq
880 aa
AA seq
DB search
MSEKNIKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPT
CGNTLGNCPGHFGHIELVRPVIHVGFVKHVYEFLKATCRRCGRVKISEDEIEKYSRIYNA
IKKRWPSAARRLTEYVKKTAMKAQVCPHCGEKQFKIKLEKPYNFYEERKEGVAKLTPSDI
RERLEKVPESDVEILGYDPTTSRPEWMILTVLPVPPITIRPSIMIESGIRAEDDLTHKLV
DIVRINERLKESIDAGAPQLIIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQ
RLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEK
LRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFN
RQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIM
LVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAIL
APREYYTGKQVVSAFLPKDFNFHGQANVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDK
KAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKE
IYNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLD
PFNFAYVMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARG
FIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRS
LYGEVIQVAYGDDGVFPMYSAHGKTVDVNRIFERVVGWKT
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaagaatataaaaggaataaaatttggaatactttctcctgacgaaataaga
aagatgtcagtgaccgcaataataactccagacgtttacgatgaagacgggactccgata
gaaggtagtgtaatggaccctaggttaggtgttatagaacctgggcagaaatgtcctacc
tgcggtaatactttaggtaactgtcctggacactttgggcatatagaattagttagacca
gtaattcatgtaggctttgtaaaacatgtatacgagtttctaaaggctacatgtagaagg
tgtggtagagttaaaatttctgaagacgaaatagagaaatattctagaatatataatgca
ataaagaaaagatggccatctgcagccagaaggttaactgaatacgtaaagaagactgca
atgaaagctcaagtttgtccccattgtggcgaaaaacagttcaagataaagttagagaaa
ccgtataatttctatgaagagaggaaagaaggtgtagcaaaactaacaccttccgatata
cgagaaagattggaaaaagtaccagaatctgatgtcgaaatattgggctacgatcctaca
accagtagaccagagtggatgatattaactgttcttccagttcctccaattacaattaga
ccttctatcatgatagagagtggaataagagccgaggacgacctaactcataagctagtc
gatatagttaggattaatgaacgattgaaagagagcatagatgccggagctccacagcta
ataatagaagatctgtgggatcttttacagtatcatgttgcaacttactttgataatgag
atcccgggattacctccttctaaacatagatcaggaaggccattaagaacacttgcacag
agattaaaggggaaagaaggtagatttagaggtaatttatctggtaaaagagttgatttc
tcatccagaacggtcatatctccagatcctaatattagtatcgatgaagtaggagtccca
gagattatagctagaacgcttacagttccggaaagaataaccccatggaatatagaaaag
ctaagacaatttgttattaatggccccgataaatggcctggtgctaattacgtgattaga
ccagatggtagaagaatcgatttaagatatgttaaagatagaaaggaacttgcatcaact
ttagctcccggctatgtagtagagcgtcatttaactgatggagatgtggttttgttcaat
aggcaaccttctcttcatagaatttcaatgatggctcatagagttagagtactaaaaggg
ttaacatttaggttaaacttgcttgtatgtcctccatataatgccgattttgatggagac
gaaatgaacttacacgttccacagtcagaagaggcaatagcggaagccaaggaaataatg
cttgtacataaaaacataataaccccaagatatggcggtccaattataggagctgctcaa
gattatataagtggtgcatatctactaacagtaaaaactacattactaactaaagaagaa
gcccagcaaatattaggtgtagcagatgttaaaattgatcttggagaacccgcaatttta
gcacctagagagtattatactgggaaacaagtagtaagtgctttcctacctaaagatttt
aatttccacggccaagctaacgttagtagtggccctagattatgtaagaatgaggattgt
ccacacgattcgtatgtagtaattaagaacggaatattattagaaggcgtgtttgataaa
aaggctataggcaaccagcaaccagaaagtattctccattggttaattaaggaatattca
gatgaatatggaaagtggttgatggataatctatttagagtatttattagatttgttgaa
ttacaagggtttacaatgagacttgaagatgtatctctaggggacgatgtaaagaaagaa
atttacaatgaaatagatagggctaaggtggaagttgataatctaatacaaaagtataaa
aatggagagttagaaccaatacccgggagaactttagaggaaagtttagagaactatatt
cttgatacattagataaattaagaagcactgctggtgatatagcaagtaaatatctagat
ccatttaatttcgcttacgtaatggcaaggactggagccagaggtagtgtattaaatata
acacagatggctgctatgttaggtcagcaatcagttagaggtgaaaggataaaaagaggg
tatatgacaaggactttgcctcactttaaaccttatgacatctcaccagaagctagaggt
ttcatatattcctcatttagaacaggtcttaagccaactgaattattcttccatgctgct
ggaggcagggaaggtctagtggatactgcagtgcgaacttcacagagcggttatatgcaa
agaagattaataaatgccttatcggacttaagggctgaatatgatgggactgtaagaagt
ttatatggcgaagttattcaagtagcgtacggcgatgatggtgtatttcccatgtattca
gctcatggtaaaacggtagatgtaaacaggatatttgaaagagtcgtggggtggaaaacg
tga
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