KEGG   Saccharolobus shibatae: J5U23_00080
Entry
J5U23_00080       CDS       T07357                                 
Name
(GenBank) Flap structure-specific endonuclease
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
sshi  Saccharolobus shibatae
Pathway
sshi03030  DNA replication
sshi03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:sshi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J5U23_00080
   03410 Base excision repair
    J5U23_00080
   03450 Non-homologous end-joining
    J5U23_00080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sshi03032]
    J5U23_00080
   03400 DNA repair and recombination proteins [BR:sshi03400]
    J5U23_00080
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sshi04147]
    J5U23_00080
DNA replication proteins [BR:sshi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    J5U23_00080
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     J5U23_00080
DNA repair and recombination proteins [BR:sshi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     J5U23_00080
Exosome [BR:sshi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   J5U23_00080
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc Ribosomal_S13 DUF2458 SHU2 HHH_5 PIN_2
Other DBs
NCBI-ProteinID: QXJ27222
UniProt: A0A8F5BL17
LinkDB
Position
complement(71773..72681)
AA seq 302 aa
MDSHGRITSHLSGLFYRTINILEEGVIPIYVFDGKPPEQKSEELERRRKIKEEAERKLER
AKSEGKIEELRKYSQAILRLSNMMVEESKNLLRAMGIPIVQAPSEGEAEAAYLNILGFSW
AAASQDYDSILFGAKRLVRNLTITGKRKLPNKDVYIDIKPELIETELLLKKLGITREQLI
DISILIGTDYNPDGIKGIGPERALKIIKKYGKIEKAIEYGEISKRDITFNIDEIRSLFLK
PQVVKPEETLDLNEPNEKDIVDILVNEHNFSEERVKNGIERLIKAIREAKGASRQTGLDR
WF
NT seq 909 nt   +upstreamnt  +downstreamnt
atggattcccatggaaggataaccagccacctaagtggattattttatagaacgataaat
atcctagaagagggtgttataccgatctacgtctttgacggcaaaccaccagagcaaaaa
agtgaagagttagaaagaaggagaaaaataaaagaagaagctgagagaaagttagagaga
gctaagagtgaagggaaaatagaagagctaaggaaatattctcaagctatacttagacta
tccaatatgatggtagaggaaagtaaaaacttgttgagagctatgggaatacctatagtt
caagcaccttccgaaggagaagctgaggctgcatatttaaatatattaggatttagctgg
gcagcggcgagtcaagattacgactcgattctttttggagctaagagattagtaagaaat
ttgacaatcactggtaaaagaaaacttcctaacaaggacgtatatatagatataaaacca
gaattaatagaaactgaattattacttaagaaattaggaataacaagagaacaattaatt
gatataagtatattaattgggaccgattataaccctgatggaattaagggaatagggcca
gaaagagcactaaagataattaaaaaatacggcaagatagagaaggcaatagaatatgga
gaaatttcaaaaagagatattactttcaatattgatgagattagaagtttatttttgaaa
ccacaagtagtgaaaccagaagaaaccttggatttaaatgaacccaatgagaaggatata
gttgacatattagtaaatgaacataacttcagtgaggaaagagttaagaatggaattgaa
agattaattaaagcaataagagaagctaaaggagcttctagacaaaccggattagatagg
tggttttag

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