Saccharolobus shibatae: J5U23_00166
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Entry
J5U23_00166 CDS
T07357
Name
(GenBank) putative RNA-binding protein
KO
K06965
protein pelota
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
J5U23_00166
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sshi03019
]
J5U23_00166
Messenger RNA biogenesis [BR:
sshi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
J5U23_00166
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
eRF1_1
eRF1_3
eRF1_2
baeRF_family2
Resolvase
YqgF
Motif
Other DBs
NCBI-ProteinID:
QXJ27302
UniProt:
A0A8F5GSE6
LinkDB
All DBs
Position
complement(144513..145547)
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AA seq
344 aa
AA seq
DB search
MRILEFDEKRQAVKLHIESEDDLWILHLILEKDDKVVAKTTRDIGLGKESRRIPMTIVLK
VDYTEFQEFTNRLRIHGIIEDAPERFGIRGAHHTVNLDIGDEIIIIKQQWNKYALDKLKK
QADKRSKIIIALVDFDEYLIAIPFEQGIKILSEKSLRSLNEEEGIIEQNALEVATELAEY
VKQYNPDAILLAGPGFFKEEVAKKVNNILKNKKVYIDSVSSATRTGLHEILKRDIIDKIM
SDYEIAIGAKKMEKAMELLAKQPELVTYGLEQVKNAVEMGAVETVLLIEDLLSSNDQERL
AIERILEDIENKRGEIILVPKESPIYFELKNLTGILAILRFRIN
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
gtgagaatattagaatttgatgagaaacgccaagcagtcaaactacatatagagtcagag
gacgatttgtggattttacatttaattctagaaaaagacgataaagtagttgctaaaact
acccgagacataggattgggaaaggagagtagaagaataccaatgaccattgtccttaaa
gtagattatacagagtttcaagagttcacaaatagattacgaattcatggaataatagaa
gatgctcctgaaagatttggaataagaggagctcatcatactgttaatttagatatagga
gatgagattatcattataaaacaacaatggaataagtatgcgttagataaacttaagaag
caagctgataagagaagcaagataataattgcattggtagattttgatgagtatttgatt
gcaataccatttgagcaagggataaagatactctcggagaaatcattaagatcattaaat
gaggaagaaggaataatagagcaaaatgcgttggaggttgcaacggagcttgcagagtat
gtgaaacaatacaatccagatgctatactactagctgggcctggattctttaaagaggaa
gtagctaaaaaagtaaataatattttaaaaaataagaaggtttatattgatagcgtatca
tcggccactaggactggtcttcatgaaatattgaagagagatataatagacaagataatg
tcagattatgagattgcaataggagctaagaaaatggaaaaggctatggaacttttggct
aaacaaccagaactagtgacctatggcttggaacaagtaaagaatgctgtcgaaatgggt
gctgtagaaacagttttactgatcgaagacctattatcttcaaacgatcaagaaaggcta
gcaattgaaagaattcttgaggatatagaaaataaaaggggggagataatattagtgcct
aaagaatcgccaatctattttgaattaaagaatcttactggtatattagctattcttaga
tttagaataaattag
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