Saccharolobus shibatae: J5U23_02510
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Entry
J5U23_02510 CDS
T07357
Name
(GenBank) RNA-2',3'-PO4:RNA-5'-OH ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sshi
Saccharolobus shibatae
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sshi03016
]
J5U23_02510
Enzymes [BR:
sshi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J5U23_02510
Transfer RNA biogenesis [BR:
sshi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J5U23_02510
Prokaryotic type
tRNA splicing ligases
J5U23_02510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QXJ29637
UniProt:
A0A8F5BQK8
LinkDB
All DBs
Position
complement(2311204..2312652)
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AA seq
482 aa
AA seq
DB search
MQINITRVNSYEWRIDKGTQECMKVPVTIFADDVLIEKMKQDMTLRQATNVACLPGVQES
IYVLPDGHQGYGFPIGGIAATAIDEGGVVSPGGIGYDINCGVRLLRTNLDYKDVKPKLAQ
LVEELHRNVPSGVGSEGKVKLTSQQLDQVLGEGVAWAVDKGFGWKEDMNHMEQHGSWELA
DPSKVSPIAKQRGASQLGTLGAGNHFLEIQVVDKIFDSQIAKAIGVDHEGQVMVMVHTGS
RGLGHQVASDYLQIMERAMKKYNIQLPDRELAAVPFESREGQDYFHAMASGANFAWTNRQ
LITHWTRESFGRVFGVDPEKLDLNIVYDVAHNIAKIEEYVIEGKRKKVLVHRKGATRAFP
PGSPEIPADHRNIGQIVLIPGSMGTASYVMAGIPEGRRTWFTAPHGAGRWMSREAAVRNY
PANVVVETLAEKGIVVRAATRRVVAEEAPGAYKDVDRVAKVAHEVKIAKLVMRLRPIGVT
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcagattaacattactagagttaattcatatgaatggcgtatcgataaaggtacccaa
gagtgtatgaaagttcccgttaccatatttgcagatgacgttttgattgagaaaatgaaa
caagatatgacattaagacaagctactaacgtggcttgtttacctggtgttcaagaatca
atttatgttttaccagatggccatcaaggttacggttttcctataggtggcatagcagct
actgcaattgatgaaggaggagttgtaagtcctggaggcataggatatgatataaattgt
ggtgttagattactcagaaccaatttagattacaaagacgtaaagccaaaattagcccag
ttagttgaggagctccatagaaacgtacctagtggtgtaggaagcgagggtaaagtgaaa
cttacctctcaacaattggatcaagtattaggagaaggagtagcgtgggcagtcgataag
ggctttggatggaaagaagatatgaatcatatggaacaacatggtagttgggagttggca
gacccttcgaaagtaagtccaatagctaaacaacgaggggcttctcaattaggaacttta
ggagctggtaatcacttcttagaaattcaagttgttgataagatattcgattctcaaatt
gctaaagcaataggagtggatcacgaaggtcaagtaatggttatggttcatacggggtca
agaggcctaggccatcaagtagctagtgattatttgcaaattatggaaagagccatgaag
aagtacaacattcaattgccagatagggaactagctgcagttccttttgagagtagagaa
ggtcaagattactttcacgcaatggcatctggagctaatttcgcgtggacgaataggcaa
ttaattactcattggacaagagagagctttggcagagtgttcggtgttgacccagagaaa
ttagatcttaatatagtttatgatgtagcgcataatatagccaaaattgaggagtatgta
attgagggaaaaaggaagaaagtattggtacataggaaaggtgctactagagccttccca
cctggcagtccagaaatccctgctgatcatagaaatattggtcagatcgtcttaatacca
ggtagtatgggtactgctagctacgttatggctggaataccagaaggtagaaggacatgg
tttactgcgcctcatggtgctggtaggtggatgtctagagaagctgcggtgagaaattac
cccgctaatgtagtagttgaaactttagctgaaaaaggtatagtggtaagggctgctacc
aggagggtagtggctgaagaggcacctggagcttataaagatgttgatagagtagctaaa
gttgctcatgaagttaaaatcgctaaattggttatgcgattaagacctataggggttacc
aaaggatga
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