Saccharolobus shibatae: J5U23_02533
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Entry
J5U23_02533 CDS
T07357
Name
(GenBank) Zinc finger, TFIIB-type domain protein
KO
K03124
transcription initiation factor TFIIB
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J5U23_02533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sshi03021
]
J5U23_02533
Transcription machinery [BR:
sshi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
J5U23_02533
Prokaryotic type
Archaeal type
TFB
J5U23_02533
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Zn_ribbon_tTFIIB
DUF7351
Sigma70_r4
Lar_restr_allev
Zn_Ribbon_1
Zn_ribbon_RRN7
Zn_Ribbon_Prim
Zn_ribbon_LysW
Zn_ribbon_3
HTH_Tnp_ISL3
HEAT_Maestro
Zn_Ribbon_YjdM
Zn_ribbon_NrdR
Zn_ribbon_Elf1
Ribosomal_S27e
DUF7573
DUF8122
Motif
Other DBs
NCBI-ProteinID:
QXJ29660
UniProt:
A0A8F5BQK9
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All DBs
Position
2333275..2334156
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AA seq
293 aa
AA seq
DB search
MKCPFCGTEDTITYDVEKGMYVCTNCGSVIEDNAVDPGPDWRAYNAKDRNEKERVGSPST
PKVHDWGFHTIIGYGRAKDRLKTLKMQRMQNKIRVSPKDKKLVTLLSILNDESSKLELPE
HVKETASLIIRKMVETGQTKRIDQYTLIVAALYYSCQVNNVPRHLQEFKVRYSISSSEFW
NALKRVQSVAKSIPDFRPKIRPTEYIPKIIYRLNLPPIIGTKASELVDLMHKQGLTSGKG
YLSLSAASVYLISALMDIKKTQKEVADSLDITEVTIRNRYKDIVDNFDIIVTL
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgaaatgtccattttgtggaacggaggacacaataacatatgatgtggaaaaaggaatg
tatgtatgtacaaactgcggcagtgtaatagaagataacgcagtagatccaggtccagat
tggagagcctataacgcaaaagacagaaatgagaaagagagagtaggtagcccaagtact
ccaaaagtacatgactggggatttcatactataataggatacggtagagctaaggacaga
ctaaaaacattaaagatgcaaagaatgcaaaataagatacgtgtgtcacctaaggataaa
aaactagtaaccttactttctattttaaatgatgagagttcaaaattagagttaccagaa
catgtcaaagaaactgcatcattaataataaggaaaatggtagaaactggacaaaccaaa
aggatagatcagtatacgctaatagttgctgccttatattattcttgccaagtgaataac
gtaccaagacatctccaagagtttaaagttagatattccatatcttctagtgaattttgg
aacgccttaaagagagttcaatctgttgcaaaatcaataccggactttcgtcctaaaatc
agaccaacagaatatataccaaaaataatatacagactaaatttacccccaattatagga
acaaaggcatccgagttagtagacttaatgcataaacaagggctgactagcggaaaagga
tacttatctttaagcgcagcttcggtttacttaatatcggcgctaatggatataaaaaag
acgcagaaagaggttgcagattcgttagatattactgaagtaactattaggaatagatat
aaggacatcgtggataattttgatattattgttacattatga
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