Saccharolobus shibatae: J5U23_02675
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Entry
J5U23_02675 CDS
T07357
Name
(GenBank) Exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5U23_02675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sshi03019
]
J5U23_02675
Messenger RNA biogenesis [BR:
sshi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J5U23_02675
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
J5U23_02675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
RRP40_S1
S1
KH_1
PIMT_C
CN_hydrolase
Motif
Other DBs
NCBI-ProteinID:
QXJ29791
UniProt:
A0A8F5GUF2
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All DBs
Position
2450738..2451481
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AA seq
247 aa
AA seq
DB search
MSQSQKIVLQPRSIVVPGELLAEGEFQIPWSPYILKVNSKYYSTVVGLFDVKDTQFEVIP
LEGSFYYPKVNDVVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSVNVGEDLRRYLDV
GDYVIARIENFDRSIDPVLSVKGKDLGRVNNGIVIDIMPVKVPRVIGKNKSMHETLTSKS
GCSMFVANNGRIWATCPSRFSEEILIEAIRKIENESHIKGLTDRIKQFIEEKLGERNASS
GETKTNP
NT seq
744 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagtcccagaaaattgttttacagccaagatcaatagtagtgcctggcgagtta
ttagctgaaggcgagttccagattccttggtctccttatatattaaaggttaatagtaaa
tattactctacagttgttggactttttgatgtaaaagatactcagtttgaagtgattcct
ttggaagggtcgttttactatcctaaggtcaatgatgtggtaataggtttagtagaggac
gttgaaatctatggttgggtggttgacataaaagcgccttataaggcatatttaccagcc
tcaaatcttttaggaagatccgttaatgttggagaggatttaaggaggtatttagatgta
ggtgactacgttatagctagaattgaaaattttgatagatcaatagatcccgttttatca
gttaagggcaaggatctaggtcgtgtaaataatggtatagtcattgatataatgccagtt
aaagttccgcgtgttataggtaagaataaaagtatgcatgagactttgacctcaaaaagt
ggatgcagcatgtttgttgccaataatggtagaatatgggctacttgtccttcccgtttt
tctgaagaaattttaatcgaggccattaggaagattgaaaatgagtcacatataaaagga
ttgacagatagaataaaacaattcattgaggaaaaattaggtgagagaaatgcttcaagt
ggagagaccaaaactaatccttga
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