Saccharolobus shibatae: J5U23_02677
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Entry
J5U23_02677 CDS
T07357
Name
(GenBank) Exosome complex exonuclease RRP45
KO
K12589
exosome complex component RRP42
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5U23_02677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sshi03019
]
J5U23_02677
Messenger RNA biogenesis [BR:
sshi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J5U23_02677
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
J5U23_02677
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
TagH_SH3-like
DUF4959
Motif
Other DBs
NCBI-ProteinID:
QXJ29793
UniProt:
A0A8F5BQW0
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Position
2452187..2453014
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AA seq
275 aa
AA seq
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MSSTPSNQNIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGT
TMVLAGTKLEIDKPYEDTPNQGNLIVNVELLPLAYETFEPGPPDENAIELARVVDRSLRD
SKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACMLASVAALYNTKVYKVEQDSNGF
RINKNEVVGKLPLNHPVVTVSIAKVDKYLIVDPDLDEESIMDTKVSFSYTPDLKIVGIQK
SGKGSMSLQDIDQAENTARLVAVKLLEELKKQLGI
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttcaactccgtcgaatcaaaatattatacctataatcaagaaggaaagtatagta
agtctttttgagaaaggcattaggcaagacggaaggaaattaacggattatagacctctt
tctataaccttggattacgcaaaaaaggctgatggttctgcgttagttaagttaggcacg
acaatggtattagctgggacaaaacttgaaatagataaaccttacgaagatacgcctaat
caaggaaacctcattgtgaatgttgaactcctacctttagcctatgagacctttgaacct
gggcctccagatgagaatgctattgaattagctagagtagtggatagaagcttaagggat
tctaaagctctagatctaactaaacttgtaatagaacccggtaaaagtgtatggacagta
tggcttgatgtttatgtattagattatggtgggaatgtattggacgcatgtatgttggcc
tcagtcgcagcattgtataatactaaagtgtataaggtagaacaagattctaatgggttt
agaatcaataaaaatgaagttgttggtaaattaccattgaatcatccagtagttacagtg
tctatagcaaaagttgacaaatatttaatagttgatccagatttggatgaagagtcaata
atggacactaaggtttccttttcctatacgccagatctaaaaatagtggggattcaaaag
agtggaaagggtagtatgtcattacaagatattgatcaggctgagaatacagcaagatta
gtagctgtcaagcttttagaagaacttaaaaagcagttaggaatttaa
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