Saccharolobus shibatae: J5U23_03018
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Entry
J5U23_03018 CDS
T07357
Name
(GenBank) AAA family ATPase Cdc48
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sshi
Saccharolobus shibatae
Pathway
sshi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
J5U23_03018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sshi03019
]
J5U23_03018
03009 Ribosome biogenesis [BR:
sshi03009
]
J5U23_03018
04131 Membrane trafficking [BR:
sshi04131
]
J5U23_03018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sshi04147
]
J5U23_03018
Messenger RNA biogenesis [BR:
sshi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
J5U23_03018
Ribosome biogenesis [BR:
sshi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
J5U23_03018
Membrane trafficking [BR:
sshi04131
]
SNARE
SNARE associated proteins
Others
J5U23_03018
Autophagy
Aggrephagy
Other aggrephagy associated proteins
J5U23_03018
Exosome [BR:
sshi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
J5U23_03018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_22
TIP49
AAA_14
AAA_33
Vps4_C
nSTAND3
AAA_28
AAA_18
IstB_IS21
RNA_helicase
Mg_chelatase
AAA_lid_PRS2_C
ABC_tran
AAA_25
NACHT
AAA_24
ATPase_2
DUF815
TsaE
NPHP3_N
AAA_3
AAA_17
AAA_7
Parvo_NS1
Molydop_binding
Zeta_toxin
AAA_11
ATP-synt_ab
PhoH
NB-ARC
ATPase
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
QXJ30127
UniProt:
A0A8F5BRJ0
LinkDB
All DBs
Position
2722356..2724635
Genome browser
AA seq
759 aa
AA seq
DB search
MRKTYFKRFGKMINMSQQLKLRVVEARQRDVGRKVARITDYTMSRLGIENGDYVEITGPS
GSSLAQALIGDGIADNEIRIDGYIRKSIGVGIGDEVTVKKAQVQDASKVVLAPTQPISFS
QSFVEYVKDWLMDKPLSRGETISVPTYVGSIDFVVVSTQPSQSVRVTGRTSLEIRQEPVK
ETAAVPKVTWEDIGDLEDVKEKIREIVELPMRHPEVFQHLGIEPPKGVLLYGPPGVGKTL
LARALANEIGAYFTSINGPEIMSKFYGESEQRLREIFEEAEKNAPAIIFIDEIDAIAPKR
EEVTGEVEKRVVAQLLTLMDGIKGRGKVIVIGATNRPDAVDPALRRPGRFDREIEIRPPD
AKARKEILQVHTRNMPLAEDVDLDKISEQTHGYTGADLAALAREAAMNALRRFINERKIN
LEQEQIPVDVLKELKVTMQDFIDAMKFIQPTLLREVYVEVPKVKWEDIGGLEEAKQQLRE
AVEWPLKFPEMFEKLGIRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKW
VGESEKAVREIFRRARQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLSEMDGIQS
LNRVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE
ELAKKLEGYTGADIEALARETTMKVLRQKYYECLNKAKKECKDQECSDKTIKNCMSNLEI
KITMQDFLDTMKVVTPSLTKADIMRYENMVKEIKRSVIG
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgagaaagacttattttaaacgtttcggaaagatgattaatatgtcccaacaattaaaa
ttgagagtggtagaagctaggcaaagagatgttggtaggaaggtcgccagaataactgat
tacactatgagtaggttaggaatagagaacggtgattatgtagagattactggaccttca
ggatcttcattagcacaagcgttaataggagatggaatagcggacaatgagataagaata
gatggttacattagaaaatccataggagtgggtattggagatgaagttacagtaaagaaa
gcacaagtgcaagatgctagcaaggtagttttagctccaacacaacctatttcctttagc
caaagttttgtagaatatgttaaagactggttaatggataaacctctaagcagaggagaa
acaatttctgttcctacttacgttggatccatagacttcgttgtagtttcaacacagcct
tcacaatctgtaagagttacaggtagaacttccttagagataagacaagaaccagtaaag
gaaactgcagcagtacctaaggtcacctgggaagatattggcgaccttgaagacgtaaag
gagaaaataagagaaatagtagaacttccaatgagacatccagaagttttccagcatcta
ggaatagaaccacctaagggtgtattactatatggaccaccaggagttgggaaaacctta
ttggccagggcgcttgctaatgaaataggtgcgtacttcacttcaatcaatggaccagaa
ataatgagtaaattctatggtgaaagtgaacagagactaagggaaatctttgaggaggcg
gaaaagaacgcgccagctataattttcattgatgaaatagatgcgatagcaccaaagagg
gaagaagttaccggagaagtagagaaaagagtggtagcgcaattgttgactctaatggat
ggaattaaaggaagaggaaaagtaatagtcataggagcaactaatagaccagatgctgta
gatccggcattaagaagaccaggtagatttgatagggaaatagagattagaccgcctgac
gctaaggctagaaaagagattctacaagtacatactagaaatatgcctctagctgaggat
gtggatttagataaaatctccgaacagactcacggctacactggagctgatctagcagct
ctagctagagaagcagcaatgaatgccttaagaaggtttattaatgaacgcaaaattaat
ctagaacaagaacaaataccagtcgatgtgttaaaggaattgaaagtaactatgcaagat
ttcattgacgccatgaagttcatccaaccaacactccttagagaagtatatgtggaagtg
ccaaaagttaaatgggaggatattggaggattagaagaagctaaacagcaattaagagaa
gctgttgagtggccattaaaattcccagaaatgttcgaaaagcttggtattagaccacct
aagggtatattgttatttggtccgccaggaactggaaagacaatgcttgcaaaggctgtt
gcaactgaaagcggagcaaacttcatagcagtaagaggaccagaaatattatccaaatgg
gtaggtgaaagtgaaaaggcagttagggaaatatttaggagggcaaggcaaacggctcct
tgtgtaatattctttgatgaaatagattcgattgcacccatgagaggctttacacacgat
tccggtgtaacagaaagaatagtaaatcagttactatcagaaatggatggaatccaatcg
ctaaatagagttgtagttatagctgcaactaatagaccagatattctagatccagctctg
ttaagaccgggtcgatttgatagattaatatatgtccccccacctgacgaaaaggctaga
atagagatactcaaaatttacactaaaacactacccatagattccagtgtgaacctagag
gagttggccaaaaaacttgagggatatactggagctgatatagaggctttagctagggag
accacgatgaaagtattaagacaaaagtattatgagtgtttaaataaagccaaaaaggag
tgtaaagaccaagagtgtagtgataagaccataaagaattgtatgagcaatctggaaata
aaaatcactatgcaagatttcctagataccatgaaggttgtaacacctagtctgactaaa
gctgatattatgagatatgaaaacatggtaaaggaaataaagagatcggtgattggttga
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