Saccharolobus shibatae: J5U23_03125
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Entry
J5U23_03125 CDS
T07357
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03022
Basal transcription factors
sshi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J5U23_03125
09124 Replication and repair
03420 Nucleotide excision repair
J5U23_03125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sshi03021
]
J5U23_03125
03036 Chromosome and associated proteins [BR:
sshi03036
]
J5U23_03125
03400 DNA repair and recombination proteins [BR:
sshi03400
]
J5U23_03125
Enzymes [BR:
sshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
J5U23_03125
Transcription machinery [BR:
sshi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J5U23_03125
Chromosome and associated proteins [BR:
sshi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
J5U23_03125
DNA repair and recombination proteins [BR:
sshi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J5U23_03125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
ResIII
DEAD
PhoH
AAA_34
HBB
TsaE
DpaA_N
Stealth_CR2
Motif
Other DBs
NCBI-ProteinID:
QXJ30229
UniProt:
A0A8F5BRR0
LinkDB
All DBs
Position
complement(2819750..2821402)
Genome browser
AA seq
550 aa
AA seq
DB search
MELREWQSKIAEKIVEALRNNFLVSLQAPTGSGKTLFALYASFKVKPKVAFIVRTHNEFF
PVYRELSLYFKDKKYGFLVGKSSACVFSSSDVDPQDIYCSGCEIFNASTITITDPPKASL
NRLKEEGKKLGFCPYYSLLESIKSADVVLLTYPYLFIPWLRESLDINWEDYVVVIDEAHN
IENVSNIEEKKLNKRIIEMAISQTKSQNVRLILERLKENIEQIIYSEDKYILIEKDKLAS
IIPPNEEIESLAEEYEEVRKNMIKNKTVSRNYLGSILRFFDLVNDERVRVFSYSNSLVAK
YIIPSYFTDILNDEKITYMLMSGTMQPLDYLRNIIGITRKILYVDAEKVMKKRLTGTYEC
LISIDVTTTYSLRSEQMARKYASYLLKIFYNSRKHVLAIFPSYEFMRIVSKFLNVRYLAE
DAETNIEEIMSNLKKEKTIIMGIARGKLAEGIEIVENGSSLISDVAMVGIPYPPIDDYLK
IRIEEISKRLKKDISSELIGIQALIAVKQSIGRAIRGPMDSATVWLLDKRYDSLWWKKEL
NCLNARKIKL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
gtggaacttagagagtggcaaagcaaaatagctgaaaaaattgttgaagcattaagaaat
aattttttagtctcattacaagcacctactggtagcggtaagactctatttgcactctac
gcttctttcaaggttaagccgaaagtggcatttattgtcagaacccataatgagtttttc
ccagtctatagagaactatcactgtattttaaagataaaaaatatggatttttagtcggt
aaatcttctgcgtgtgtttttagttcttccgacgttgatccccaagatatatattgtagt
ggatgtgaaatttttaacgcgtccacaattactataactgatccgccaaaggcaagtctg
aatagactaaaggaggagggtaaaaaattagggttttgcccatactactcgctattggag
agtataaaaagcgctgatgtggtactactcacttatccttatctgtttataccttggctt
agagaatccttagatattaattgggaggactatgttgtcgtgatagatgaggctcataat
atagagaatgtttctaatatagaggagaaaaagttaaacaaaagaatcatagagatggca
atttctcaaactaaatcacagaatgtgagattaatattggaaaggctcaaggaaaacata
gaacaaataatctattcagaggataaatatatacttattgaaaaggacaaattagccagc
atcattcctcctaatgaggaaattgagagtctagctgaggaatatgaagaagttagaaag
aatatgataaaaaataagacagtaagtaggaattatcttggttcaattttgaggtttttt
gatttagttaatgatgaaagagttagagttttttcatattcaaattccttggttgcaaaa
tatataataccctcctattttactgatatactaaacgatgaaaaaattacctatatgtta
atgtcaggtactatgcaacccttggattatcttagaaatattataggaattactagaaaa
atattatatgttgacgctgaaaaggtcatgaaaaagagattaactgggacatatgagtgt
cttatatctatagatgttacaactacttatagtttaaggtcagagcagatggcacgtaaa
tacgcatcatatttattaaaaattttctataattccagaaagcatgttctagctatattt
cctagctacgagtttatgcgaattgtatctaaatttctaaatgtaagatatttggcagag
gatgcagaaaccaatatcgaagagataatgagtaatctgaaaaaagaaaaaacaattata
atgggtatagcaaggggtaagttagctgaaggaattgaaatagttgaaaacggaagtagt
ttgatatcagatgtggcaatggtaggtatcccttatcctccaatagatgattacttaaag
atacgtattgaggagatatcaaaaagactgaaaaaagatattagtagcgaactaatcggc
atacaagcattaattgcggtaaaacaatccataggtagggccatcagaggtccaatggat
agcgcaacagtatggcttctcgataaaagatatgacagtctatggtggaagaaagaactt
aattgcttgaatgcaaggaaaattaaactgtga
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integrated database retrieval system
