Saccharolobus shibatae: J5U23_03143
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Entry
J5U23_03143 CDS
T07357
Name
(GenBank) Exosome complex RNA binding Csl4
KO
K07573
exosome complex component CSL4
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5U23_03143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sshi03019
]
J5U23_03143
Messenger RNA biogenesis [BR:
sshi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
J5U23_03143
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
J5U23_03143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
S1
Zn_ribbon_Com
OB_RRP5_4th
DUF5817
FtrD-like
Cas12f1-like_TNB
HypA
C1_1
Motif
Other DBs
NCBI-ProteinID:
QXJ30247
UniProt:
A0A8F5BRR9
LinkDB
All DBs
Position
2836348..2836917
Genome browser
AA seq
189 aa
AA seq
DB search
MRVQGELALPGEELAVIEEFIAGDGTYEQNGIVRAAVVGKIFYDMLNRKSNVLGFKKIIL
QHLKKAKYVIGIVNSIKEDSALVSIVGIEEKSLASSISAYLHISQISNKKLNSITDAIKI
GDVIKAKLLSYTFPLALTIKMKDLGVVYARCSRCGYLLIKQDENNLKCQRCGNIEQRKIG
SYMVKKGGN
NT seq
570 nt
NT seq
+upstream
nt +downstream
nt
atgagagttcaaggtgaattagccttacccggagaagagctagcagtgattgaagaattt
atagctggcgatggtacgtatgaacaaaatggtatagttagagctgcggttgtaggaaaa
atcttttatgatatgctaaataggaaaagtaacgtattgggatttaagaaaatcatactt
caacacttaaagaaggctaaatacgtgatcggtattgtaaattctattaaagaagattca
gcactagtttcaatagtaggtatcgaggagaaaagtcttgcgtcatcaatttcggcttac
ttacatatctctcaaataagtaataaaaaacttaatagtataacagatgctataaaaatc
ggagacgtaattaaagctaaattactttcatacacttttcctttagctttaactattaag
atgaaagatcttggagttgtttatgctagatgctcaagatgtggatacttattgatcaaa
caagacgaaaataatttaaaatgtcagagatgcggaaatattgaacaacgaaaaatagga
tcttatatggtgaagaaaggtggaaattaa
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