KEGG   Saccharolobus shibatae: J5U23_03200
Entry
J5U23_03200       CDS       T07357                                 
Name
(GenBank) Archaeal transcription factor E
  KO
K03136  transcription initiation factor TFIIE subunit alpha
Organism
sshi  Saccharolobus shibatae
Pathway
sshi03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sshi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    J5U23_03200
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sshi03021]
    J5U23_03200
Transcription machinery [BR:sshi03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIE
     J5U23_03200
 Prokaryotic type
  Archaeal type
    TFE
     J5U23_03200
SSDB
Motif
Pfam: TFIIE_alpha HTH_20 TrmB HTH_9 HTH_IclR Sigma70_r3 Fe_dep_repress GntR HTH_12 HTH_24 HTH_36 HTH_Crp_2 DnaD_N Rrf2 HTH_5 DUF4423 HTH_11 LexA_DNA_bind Zn_Ribbon_TF HTH_DeoR MarR MarR_2 RPA_C DUF7342 CdaS_N Zn_ribbon_10 TSKS WHD_MCM8 Mut7-C
Other DBs
NCBI-ProteinID: QXJ30302
UniProt: A0A8F5GVE0
LinkDB
Position
2872620..2873156
AA seq 178 aa
MVNAEDLFINLAKSLLGDDVIDVLRVLLEKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ
GFVSYRKTRDKDSGWFIYYWKPNIDQINEILLNRKRLILDKLKSRLEYEKNNTFFICPQD
NSRYSFEEAFENEFKCLKCGSQLTYYDTEKIKSFLEQKIRQIEEEIDKETKLGANKSH
NT seq 537 nt   +upstreamnt  +downstreamnt
atggttaacgcagaggacttgtttattaatctagcgaaaagcttgttgggagatgacgtg
atcgatgttttgcgagtgctactagaaaaagggactgaaatgacagatgaagaaatagcg
aatcagcttaatataaaggttaatgatgtgagaaagaaattgaatttgctggaggagcaa
ggttttgtaagttataggaaaacaagggataaagatagcggatggttcatttactattgg
aagcctaacatagatcaaattaatgagatactattaaatagaaaaagattaatattagat
aaattaaaatcaagattagaatatgagaaaaataatacgttcttcatatgtccacaagat
aatagtagatattcatttgaggaagcgttcgaaaatgaatttaaatgtttgaagtgtgga
tctcagctaacctactatgatacggaaaagattaagtcattcttggagcaaaaaataaga
caaatagaggaagagatagataaggagacaaaacttggggcaaataaaagtcattga

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