Saccharolobus shibatae: J5U23_p2923
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Entry
J5U23_p2923 CDS
T07357
Name
(GenBank) DNA repair helicase Rad3
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
sshi
Saccharolobus shibatae
Pathway
sshi03022
Basal transcription factors
sshi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sshi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
J5U23_p2923
09124 Replication and repair
03420 Nucleotide excision repair
J5U23_p2923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sshi03021
]
J5U23_p2923
03036 Chromosome and associated proteins [BR:
sshi03036
]
J5U23_p2923
03400 DNA repair and recombination proteins [BR:
sshi03400
]
J5U23_p2923
Enzymes [BR:
sshi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
J5U23_p2923
Transcription machinery [BR:
sshi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
J5U23_p2923
Chromosome and associated proteins [BR:
sshi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
J5U23_p2923
DNA repair and recombination proteins [BR:
sshi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
J5U23_p2923
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XPD_arch
Helicase_C_2
DEAD_2
ResIII
nSTAND3
DEAD
GvpD_P-loop
SLFN-g3_helicase
ATPase
AAA_22
DnaB_C
AAA_25
AAA_16
TIP49
TsaE
AAA
NPHP3_N
PrgU
Motif
Other DBs
NCBI-ProteinID:
QXJ27141
UniProt:
A0A8F5BRC4
LinkDB
All DBs
Position
pB12E5:32618..34231
Genome browser
AA seq
537 aa
AA seq
DB search
MELQLRQWQEEKLGEALNVIKNGKTLILSANPGAGKTIFALLLARMLNKKAVFFVRTHSE
FESVYKNAKMLGMSVGFLFGKSSSCVYAEGNEDPEDINCDLCSLKEKIKVIDDKEPTKVL
AEIKHAEDYCPYYSLKSTLKSREVIVLTYPYLFSRYIRNSLFMKKDGLTPSDYLAVIDEA
HNILEADKWFMKRITKKTVERAMEEVDVVGSLGKTNVIDIKDYLNSLLNFMEQLVSDGKC
HSLPIIPRPNPELLRKINMATATYVNLNKGPVSKSSLRALSKFLNESGEVFNCNGSLVVI
PNNYYDEMTEALNLFKYKVLMSGTMPQLSLPNSHRIDVNVSLGKAEYYYCSSVSSSMRNR
TSNASIYAEILTKIYDSSSSNVLVFFPSYSMLSLVKEKIKGIPVIEEGRKITHSEMLELL
KGRKYLVFLVTRAKESEGIEFRDEKNKNLFDSLVLAGLPYPNVSDDMVKHRTERLAKIWG
VSEEEVAKQITLITIKQTIGRAFRDPNDYVKIYLCDSRYKEYFSDLGISEKEIKLFA
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggaattgcagttaagacagtggcaggaagagaagttaggcgaagcactcaacgttatt
aaaaacggtaaaactttgatactttccgcaaaccccggagctggaaagacaatatttgca
ttactcctagcgaggatgttaaacaagaaggcagtgttctttgtaaggactcacagtgag
tttgagagcgtttataagaacgctaaaatgttgggtatgagtgttggtttcctcttcggt
aaatcctcctcatgtgtgtatgctgaaggtaatgaggatccagaagacattaactgtgac
ctatgttctttaaaagagaaaattaaagtgatagacgataaagagcctactaaagtcctt
gctgagattaaacacgctgaggactattgcccttattactctttgaaatcaacactgaaa
tccagggaagttatagtactcacttacccttacctattttccagatacataagaaactca
ctcttcatgaagaaagatggattaactccctcggattatttggcagtaatcgatgaagcc
cacaatattttagaggcagacaaatggtttatgaagagaattactaagaaaacagtagag
agagcaatggaggaagttgacgtagtagggagtttaggaaaaactaatgtaatcgacata
aaggattacttaaactctctactaaatttcatggaacaattagtaagtgacgggaagtgt
cattccctacccataattcccagaccgaacccggagctgttaaggaagataaatatggcg
actgctacttacgtaaatttgaataaaggacctgtaagcaaatcatctttaagggctttg
agtaagttccttaacgagagcggtgaagtattcaattgcaacgggtctcttgtagttatt
cctaacaattattatgatgaaatgactgaggcgttaaacctattcaaatataaagtgttg
atgagcggtacaatgccacagctctctttacctaactcgcacaggatagacgttaatgta
agtttgggaaaagcggaatattattactgcagtagcgtttcttcatcgatgcggaacaga
acttctaatgcgagcatttatgcggaaattcttactaagatatatgattcgagcagttct
aatgttttagtcttctttcccagctatagtatgctttctttagttaaagagaagattaag
ggaataccggtaatagaggagggtaggaagataacgcattctgaaatgcttgagctattg
aaaggtaggaagtatttagtatttctcgtaacaagggctaaagaaagtgagggcattgaa
ttcagggatgagaagaataagaatctgtttgattctttggtgttagctggtttaccttat
cctaacgtttcagatgacatggtaaagcatagaacggaaaggttggctaagatttggggg
gttagtgaggaggaagtggctaagcagattacattaattactataaagcagactatcggc
agggcttttcgtgaccctaacgattacgttaagatttacctttgtgacagtcgttataag
gagtacttttctgacttgggtatttctgaaaaagagattaagctttttgcttag
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