Streptomyces alfalfae: A7J05_04210
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Entry
A7J05_04210 CDS
T05110
Name
(GenBank) DNA lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
A7J05_04210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssia03400
]
A7J05_04210
Enzymes [BR:
ssia01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
A7J05_04210
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
A7J05_04210
DNA repair and recombination proteins [BR:
ssia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
A7J05_04210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
Zn_ribbon_RRN7
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
APY85044
LinkDB
All DBs
Position
complement(1139383..1140243)
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AA seq
286 aa
AA seq
DB search
MPELPEVEALRGFLTDELVGRRMTAVVPVAVNVLKTYDPPLLALEGRTVTGVARHGKFLD
VDAEGLHLVTHLARAGWLQWRDPLPEGLPRPGKGPLALRVALDTRQGFDLTEAGTQKRLA
VYVTPEPAEIEGIARLGPDPFAPDFGEERFAALLAGERRQVKGALRDQSLIAGIGNAYSD
EILHAARMSPFKLTSSLTEEDVHGLYGALVTTLTGAVERSRGLAAGRLKAEKKSGLRVHG
RTGEPCPVCGDTIREVSFADSSLQYCPTCQTGGKPLADRRMSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggaactgcccgaagtggaggcgctgcgcggttttctgacggacgagttggtcggc
cgccggatgacggccgtcgtgcccgtcgcggtcaacgtcctcaagacgtacgacccgccc
ctcctcgccctggagggccgcacggtcacgggtgtggcgcggcacggcaagttcctcgac
gtcgacgccgaagggctgcacctggtgacgcatctggcccgcgcgggctggctgcagtgg
cgcgacccgctccccgagggcctgccacggcccggcaagggcccgctggcgctgcgggtg
gccctggacacccggcagggcttcgacctcacggaggcgggcacccagaagcgcctcgcg
gtgtacgtgacgccggagcctgcggagatcgagggcatcgcccgcctggggcccgacccg
ttcgccccggacttcggcgaggagcggttcgccgcgctgctcgcgggcgaacggcggcag
gtcaagggggcgttgcgcgaccagagcctcatcgcgggcatcggcaacgcgtacagcgac
gagatcctgcacgcggcccgcatgtcccccttcaagctcacgtcgagcctcaccgaggag
gacgtccatggactgtacggggccctggtcaccacgctgaccggggcggtggagcgctca
cggggcctggcggccggccggctcaaggcggagaagaagagcggcctgcgcgtgcacggc
cgcacgggcgagccgtgcccggtgtgcggcgacaccattcgcgaggtgtccttcgccgac
tcctcgctgcagtactgccccacgtgccagacgggcgggaaaccgctggcggaccggcgg
atgtcgcgcctgctgaagtga
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