Streptomyces alfalfae: A7J05_09985
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Entry
A7J05_09985 CDS
T05110
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J05_09985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssia03019
]
A7J05_09985
03400 DNA repair and recombination proteins [BR:
ssia03400
]
A7J05_09985
Enzymes [BR:
ssia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7J05_09985
Messenger RNA biogenesis [BR:
ssia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A7J05_09985
DNA repair and recombination proteins [BR:
ssia03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
A7J05_09985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
PglZ_C
Pribosyltran
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APY85997
UniProt:
A0ABN4VGX9
LinkDB
All DBs
Position
complement(2516883..2519042)
Genome browser
AA seq
719 aa
AA seq
DB search
MDDPELRAEADAILADLVGDPSGAARLREDQWQAVAALVKERRRALVVQRTGWGKSAVYF
VATALLRRRGAGPTVIISPLLALMRNQVEAAARAGIQARTINSANPEEWGTIYGEVERGE
TDVLLVSPERLNSVDFREQVLPELAATTGLLVVDEAHCISDWGHDFRPDYRRLRAMLAEL
SEGVPVLATTATANARVTADVAEQLGTGAGEALVLRGTLERESLRLGVVRLPDAAHRLAW
LAEHLPELRGSGIIYALTVAAAEEATAFLRQRGFDVASYTGRTENADRLQAETDLQENRV
KALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHADVLLLPGKEDEAI
WRYFADTAFPPEAQVRQTLAALADAGRPLSVPALEASVDLRRTRLETMLKVLDVDGAVKR
VKGGWTATGAEWTYDAERYAWVAKQRAAEQQAMRDYVSTDRCRMEFLRRQLDDEGAVPCG
RCDNCAGPWADSAVSAEMLTGAAKELDRPGVEIEPRRMWPTGMPALGVDLKGRIPAKEQC
SAGRAIGRLSDIGWGNRLRPLLAETAPDGPVPDDVLRAAVDVLADWARSAGGWASGADDA
PARPVGVVAVPSLARPRLVGSLAQGIASIGRLPFLGTLTYTGADGAHAARRSNSAQRLRA
LSGAFAVSDELAGALAAAPGPVLLVDDSTDSGWTLAVAARLLRRAGADQVLPLVLAAAG
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atggacgatccggaactccgcgccgaagccgatgccatcctcgccgatctcgtcggcgac
ccgagcggtgcggcgcggctgcgcgaggaccagtggcaggccgtggccgcgctggtgaag
gaacgcagacgcgctctggtggtgcagcgcaccggctgggggaagtcggcggtgtacttc
gtcgcgaccgccctgctgcgccgccgcggcgcgggccccacggtgatcatctcgccgctg
ctcgcgctcatgcgcaaccaggtcgaggcggcggcacgggcgggaatccaggcccgcacc
atcaactccgccaaccccgaggagtgggggaccatctacggagaggtggagcgcggcgag
acggacgtcctcctggtcagccccgagcggctgaattccgtggacttccgcgagcaggtg
ctgcccgagctggcggcgacgaccggcctcctcgtggtcgacgaggcgcactgcatctcc
gactggggccacgacttccgccccgactaccgcaggctgcgcgcgatgctcgccgagctg
tccgagggcgtcccggtgctcgccaccaccgcgacggcgaacgcacgggtgaccgccgac
gtcgccgagcagctcggcaccggcgcgggcgaggccctcgtgctgcgcggcacgctggag
cgggagagcctgcggctcggcgtggtccggctgccggacgccgcgcaccgcctggcctgg
ctggctgagcacctgccggagctgcggggctccgggatcatctacgcgctcacggtcgcc
gcggccgaggaggccaccgccttcctgcggcagcgcggcttcgacgtggcctcgtacacg
ggacgtacggagaacgccgaccggctgcaggccgagaccgacctccaggagaaccgcgtc
aaggcgctggtcgcgacgtccgcgctcggcatgggcttcgacaagccggacctgggcttc
gtggtccacctcggttcgccgtcctcgccgatcgcgtactaccagcaggtcgggcgcgcg
ggccgtggcgtcgagcacgccgacgtcctgctgctgcccggcaaggaggacgaggccatc
tggcgctacttcgccgacacggccttcccgccggaggcgcaggtgcggcagaccctcgcg
gccctcgcggacgcgggccgcccgctgtcggtgccggccctcgaagcgtcggtcgacctc
agacgcacccgcctggagaccatgctgaaggtcctcgacgtcgacggcgcggtcaagcgg
gtcaagggcggctggacggccacgggcgccgagtggacgtacgacgccgagcgctatgcc
tgggtggcgaagcagcgggcggccgagcagcaggcgatgcgggactacgtgagcacggac
cggtgccgcatggagttcctgcgccggcagctcgacgacgagggggcggtcccctgcggg
cgctgcgacaactgcgcggggccgtgggcggattcggccgtctccgccgagatgctgacg
ggcgcggccaaggagctggaccgtccgggcgtggagatcgagccgcgccggatgtggccg
acgggcatgcccgccctcggcgtcgacctcaaggggcgcatcccggcgaaggagcagtgc
tccgccggacgcgccatcggacggctctcggacatcggctggggcaaccgcctgcggccg
ctgctcgccgagaccgcgcccgacggccccgtccccgacgacgtcctgcgcgccgcggtg
gacgtcctcgccgactgggcgcgctcggcggggggctgggcgtcgggcgccgacgacgcc
ccggcgcggccggtgggtgtggtcgccgtgccgtcgctggcccggccgcggctggtcggt
tcgctcgcccagggcatcgcgtccatcggccgcctgcccttcctcggcacgctgacgtac
accggggcggacggcgcgcacgccgcccgccgcagcaactccgcgcagcgtctgcgagcg
ctgtccggagcgttcgccgtctccgacgagctggcgggcgcgcttgcggcggcgccgggg
ccggtgctgctcgtggacgacagcacggactccggctggaccctggcggtcgccgcccgc
ctgctgcgcagagcgggcgccgaccaggtccttccgctggtgctcgcggcggcggggtga
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