Streptomyces alfalfae: A7J05_12055
Help
Entry
A7J05_12055 CDS
T05110
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J05_12055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssia03021
]
A7J05_12055
03019 Messenger RNA biogenesis [BR:
ssia03019
]
A7J05_12055
Transcription machinery [BR:
ssia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A7J05_12055
Messenger RNA biogenesis [BR:
ssia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A7J05_12055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA
AAA_22
ResIII
PIP5K
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
APY86351
UniProt:
A0ABN4VFS4
LinkDB
All DBs
Position
complement(3013520..3015592)
Genome browser
AA seq
690 aa
AA seq
DB search
MSDTTDLMGVTADTPATDASAAPATGASAGSRRRRGTGLEGMVLAELQQVASGLGIKGTG
RMRKSQLIEVIKEAQAGGGAPAKSAAPAADAATETKPKRRATSKARTGEDAAEGAAKAGK
PDKADDGKAEKAAAQQQIDIPGQPAGGPARASETERGGDDQPAGERRRRRATADAGSPET
VTAEAKAEARTESKGDAAEARNDKGGDGDGAEGRRERRDRQGRGRDRDRRGNKGDDQQGG
GRQDRQDRQDRQQQGGGRQDRQDRQRDNGPQDDDDFEGGRRGRRGRYRDRRGRRGRDEQG
FGNEPQVSEDDVLIPVAGILDILDNYAFIRTSGYLPGPNDVYVSLAQVRKNGLRKGDHVT
GAVRQPKDGERREKFNALVRLDSVNGMAPESGRGRPEFNKLTPLYPQDRLRLETDPGVLT
TRIIDLVAPIGKGQRGLIVAPPKTGKTMIMQAIANAITHNNPECHLMVVLVDERPEEVTD
MQRSVKGEVISSTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAA
PASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALVDTGSRMDEVIFEEFKGT
GNAELKLDRKLADKRIFPAVDVDASGTRKEEILLGSDELAITWKLRRVLHALDQQQAIEL
LLDKMKQTKSNAEFLLQIQKTTPAPGNGND
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgacaccaccgatctgatgggcgtgactgccgacacgcccgccacggacgcctcc
gcggcgcctgccaccggtgcttcggccgggtcccggcggcgccgcggcaccggcctcgag
ggcatggtgctggcggaactgcagcaggtcgcatcgggccttgggatcaagggcaccggg
cgcatgcgcaagagccagctgatcgaggtcatcaaggaggcgcaggccgggggcggagcc
ccggcgaagagcgccgcgcccgccgcggacgccgccaccgagaccaagcccaagcgccgc
gccacatcgaaggcccgtacgggcgaggacgccgcggagggcgccgccaaggccggcaag
ccggacaaggcggacgacggcaaggccgagaaggccgccgcccagcagcagatcgacatc
cccggtcagccggccggcggccccgctcgcgcgagcgagaccgagcgcgggggagacgac
cagcccgccggtgagcgccgcaggcgccgggccacggccgacgcgggcagccccgagacc
gtcaccgccgaggcgaaggccgaggccaggaccgagtccaagggcgacgccgccgaggcc
aggaacgacaagggcggcgacggcgacggcgccgagggccgccgcgagcgccgtgaccgc
cagggccgcggccgtgaccgcgaccgccgcggcaacaagggcgacgaccagcagggcggc
ggccgtcaggaccgccaggaccgccaggaccgccagcagcagggcggcgggcgccaggac
cgccaggaccgccagcgggacaacggtccgcaggacgacgacgacttcgagggcggccgc
cgcggccgccggggccgttaccgcgaccgccgtggccgtcgtggccgcgacgagcagggc
ttcggcaacgagccgcaggtctccgaggacgacgtcctgatccccgtcgcgggcatcctg
gacatcctcgacaactacgcgttcatccgcacgtcgggctacctcccgggacccaacgac
gtctacgtctcgctggcccaggtccgcaagaacggcctgcgcaagggtgaccacgtcacc
ggtgcggtccgccagcccaaggacggcgagcgccgcgagaagttcaacgcgctcgtacgc
ctggactcggtcaacggcatggcgcccgaatccgggcgcgggcggccggagttcaacaag
ctgacgccgctctacccgcaggaccggctccgcctggagaccgacccgggcgtgctcacc
acccgcatcatcgacctcgtcgcgcccatcggtaaggggcagcgcggtctgatcgtggcc
ccgccgaagaccggcaagaccatgatcatgcaggcgatcgccaacgcgatcacgcacaac
aaccccgagtgccacctgatggtcgtcctggtcgacgagcgtccggaagaggtcaccgac
atgcagcggtcggtgaagggcgaggtcatctcctcgaccttcgaccgtcccgcggaggac
cacaccacggtcgccgagctcgccatcgagcgtgccaagcgcctggtggagctgggccac
gacgtcgtcgtgctgctcgactcgatcacccgcctcggccgcgcgtacaacctcgcggcc
ccggcctccgggcgcatcctgtccggtggtgtcgactcgacggccctctacccgccgaag
cgcttcttcggtgcggcgcgcaacatcgaggacggcggctcgctgaccatcctcgcgacc
gcgctcgtcgacaccgggtcccgcatggacgaggtcatcttcgaggagttcaagggcacc
ggcaacgcggagctcaagctcgaccgcaagctcgccgacaagcgcatcttccccgcggtg
gacgtcgacgcgtccggcacccgcaaggaggagatcctgctcggctccgacgagctggcg
atcacctggaagctgcgccgcgtgctgcacgcgctcgaccagcagcaggcgatcgagctg
ctcctggacaagatgaagcagacgaagtcgaacgccgagttcctgctccagatccagaag
accacgccggcgccgggcaacggcaacgactga
DBGET
integrated database retrieval system
