Streptomyces alfalfae: A7J05_15860
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Entry
A7J05_15860 CDS
T05110
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ssia
Streptomyces alfalfae
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ssia03016
]
A7J05_15860
Enzymes [BR:
ssia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A7J05_15860
Transfer RNA biogenesis [BR:
ssia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A7J05_15860
Prokaryotic type
tRNA splicing ligases
A7J05_15860
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RtcB
ASXH
Motif
Other DBs
NCBI-ProteinID:
APY87014
UniProt:
A0A1P8THB7
LinkDB
All DBs
Position
complement(3853985..3855178)
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AA seq
397 aa
AA seq
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MSYAEVAGAKVPIRMWADPASVEESAMRQLQNVATLPWIKGLAVMPDVHFGKGATVGSVI
AMRGAVCPAAVGVDIGCGMSAVKTSLTANDLPGDLSRLRSKIEQAIPVGRAMHDDPVAPG
RIHGMATSGWDDFWGRFDGVAQAVRFRHERAVKQMGTLGGGNHFIEFCLDEAGAVWLMLH
SGSRNVGKELADHHIGVAQKLPHNQGLVDRDLAVFVSDTPQMAAYRNDLFWAQEYAQYNR
ALMMGLFKDVVRKEFKKAKVAFEPVISCHHNYVAEERYDGMDLLVTRKGAIRAGGGDLGI
IPGSMGAGSYIVRGLGNEASFNSASHGAGRRMSRGAAKRRFSTRDLEEQTRGVECRKDSG
VVDEIPAAYKPIEQVIDQQRDLVEVVAKLKQVICVKG
NT seq
1194 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgcggaagtagccggtgcgaaagtgccgatccggatgtgggccgacccggcg
tcggtcgaggaatcggcgatgcggcagctccagaacgtcgcgacgctgccctggatcaag
ggactcgcggtcatgccggacgtccacttcggcaagggcgcgacggtcggttcggtgatc
gccatgcgcggcgcggtctgcccggcggcggtcggcgtcgacatcggctgcggcatgtcg
gcggtgaagacctccctgacggcgaacgacctgccgggcgacctgtcccgcctgcggtcg
aagatcgagcaggcgatcccggtgggccgggcgatgcacgacgacccggtggcgccaggc
cgcatccacggcatggccacgtcgggctgggacgacttctggggccgcttcgacggggtc
gcacaagcggtcaggttccgtcacgaacgtgccgtgaagcagatgggcacgctcggcgga
ggaaaccacttcatcgagttctgcctcgacgaggcgggcgcggtctggctgatgctccac
tccggttcgcgcaacgtcggcaaggaactggccgaccaccacataggcgtggcccagaag
ctcccgcacaaccagggcctggtcgaccgcgacctggcggtcttcgtctcggacaccccg
cagatggcggcgtaccggaacgacctgttctgggcgcaggagtacgcgcagtacaaccgc
gcgctgatgatggggctcttcaaggacgtcgtccgcaaggagttcaagaaggcgaaggtg
gccttcgagccggtgatctcctgccaccacaactacgtggcggaggagcggtacgacggc
atggacctgctcgtcacgcggaagggcgccatccgggcgggcggcggcgacctcgggatc
atccccggctccatgggcgccggctcgtacatcgtcaggggtctcggcaacgaggcgtcc
ttcaactccgcctcgcacggcgcggggcggcgcatgagccggggcgccgcgaagcgccgg
ttctcgacgcgggacctggaggagcagacgcggggcgtcgagtgccgcaaggactcgggc
gtcgtggacgagatcccggccgcctacaagccgatcgagcaggtcatcgaccagcagcgc
gacctcgtcgaggtggtggcgaagctgaagcaggtcatctgcgtgaagggctga
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