Streptomyces alfalfae: A7J05_20595
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Entry
A7J05_20595 CDS
T05110
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A7J05_20595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssia03021
]
A7J05_20595
03019 Messenger RNA biogenesis [BR:
ssia03019
]
A7J05_20595
Transcription machinery [BR:
ssia03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
A7J05_20595
Messenger RNA biogenesis [BR:
ssia03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
A7J05_20595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
NACHT
ATPase_2
AAA_22
AAA_16
SseB
AAA
AAA_28
Motif
Other DBs
NCBI-ProteinID:
APY87789
UniProt:
A0ABN4VMT2
LinkDB
All DBs
Position
4923525..4924682
Genome browser
AA seq
385 aa
AA seq
DB search
MVDREAADSTAHHVKGVLDIARDGRGYVRGPDCLPGPADVQVPAPLVRQSGLRTGDFVEG
VCGRPRVLAGVERLNGRDPREPRPRRRFGDLTPLHPRERLRLETAGGPAATRLVDLVAPV
GKGQRGLLVAPPKTGKTVLLQQIAAAIAENHPECHLMVVLLDERPEEVTDMRRSVRGEVL
ASTFDRPAKQHIALAELAVERAKRMVEDGRDVVMLFDSLTRLCRAYNTAAASGGRTLSGG
VDASAVQGPKRLFGAARLAEEGGSLTMLATALVETGSRADDYYFEELKGTGNMELRLDRT
LAGQRLFPAIDVIPSGTRREELLPRAELTAMHGLRRALQGREGQSALEALLDRVKKTPSN
AAFLRQVQQTVPGAGSPGAGPVTGA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggtggatcgggaagcggccgactcaaccgcccaccacgtcaagggcgttctggacatc
gcgagggacgggcgcggctacgtccggggccccgactgcctgccgggccccgcggacgtg
caggttcccgcgcccctcgtacggcagtcgggcctgcgcaccggcgacttcgtcgaaggg
gtctgcggtcgcccccgggtgctggccggggtcgaacgcctcaacgggcgtgatccccgg
gagccccggccgcgccgccgcttcggggacctcacgccgctgcacccccgcgagaggctc
cgcctggagaccgcgggcgggcccgccgcgacgcggctcgtcgatctcgtcgcgcccgtc
ggcaaggggcagcgcggcctgctcgtcgcgccgcccaagaccggcaagaccgtgctgctc
cagcagatcgccgcggcgatcgcggagaaccaccccgagtgccacctcatggtcgtcctg
ctcgacgaacggcccgaggaggtcaccgacatgcggcgctctgtccgcggtgaagtgctc
gcctcgaccttcgaccggcccgccaagcagcacatcgccctcgccgaactcgccgtggag
cgcgccaagcgcatggtcgaggacgggcgcgacgtcgtcatgctcttcgactcgctgacc
cggctgtgccgcgcgtacaacaccgcggcggcgagcggcgggcgcacgctcagcggcggc
gtggacgcgtccgccgtgcagggcccgaagcgactcttcggcgccgcgcgcctcgccgag
gagggcggctccctgacgatgctcgcgaccgctctggtggagaccgggtcgcgcgccgac
gactactacttcgaggagctgaagggcacggggaacatggagctgcggctggaccgcacc
ctcgcgggacagcgcctcttccccgccatcgacgtcattccctccggcacccgccgcgag
gaactgctgccgcgcgcggagttgacggccatgcacgggctgcggcgagccctgcagggg
cgtgaggggcagagcgcgctcgaagcgctgctcgaccgggtcaagaagacgccgagcaat
gccgcgttcctgcggcaggtccagcagaccgtgccgggggccgggtcgccgggggccggg
ccggtcactggcgcgtga
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