Sporomusa silvacetica: SPSIL_003310
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Entry
SPSIL_003310 CDS
T10425
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPSIL_003310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssid03400
]
SPSIL_003310 (mfd)
Enzymes [BR:
ssid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPSIL_003310 (mfd)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SPSIL_003310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_16
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
XFO64241
LinkDB
All DBs
Position
360684..363992
Genome browser
AA seq
1102 aa
AA seq
DB search
MGEKTSLRLLTALPEDKALRQAQAAFSLPDGQSLIYGLTGTQKSVFLAAAFQAAARPTII
IAANHEAIDVFRTDFAVLLPEVPIVELPALDMVTFAAAAKSVELAAKRMDVLNRLARGEK
LIVLATAEAAMQKVLPKQEFLNSRITIHSDSVVSREELIGSLVAYSYERVDQVDSAGQFS
VRGGIIDIFAVNRSLPLRLELFGDEVDSLREFDPVSQRSVQDLVLADIMPLTQTEHSGKA
AVFVSYLPASATTILDEPARLREQMTKLVKENPDSKRRVFAWAELVAACQAYNVIYLSLL
LQKIPHTQPTEIISITAKGIAPFHRQIELLIAEIKSWQDKRYNIVIFMSSQDKAVNIERN
LADEGITAIMPQSGAMPLIPGAVVVLTGALSGGFEFPQARLVVLTEFDIFGRQKKKRRLR
VGKEQQITYFRDINLGDYVVHVNHGIGKYVGVETLEVGGVHKDYLHIRYAGDDKLYVPTD
QVGQLQKYIGSEGDVPRLSKMGGSDWLKVKTKAKAAVADMAKELIALYAKRQLQVGYTFG
PDTPWQQEFEDAFAYEETPDQLQAIAEVKHDMEQSRPMDRLLCGDVGFGKTEVAIRAAFK
AVMGGKQVAVLVPTTVLAQQHFQTFSSRFADFGTVVDVISRFRSAREQKATLQKVAMGQV
DVLIGTHRILQSDVIFKDIGLLIVDEEQRFGVAQKEKMKRWRANLDVLTLSATPIPRTLH
MSLVGARDMSIIETPPEDRFPVQSYVVEYNEEIIREAIVRELKRGGQVYFVYNRVQTIDK
IRQRLTEILPDATIKTGHGQMPEELLEQVMLDFYEGHDDVLLCTSIIENGLDVSNANTII
IYDADHFGLSQLYQMRGRVGRSHRMAYAYFTYRQDKVLTEVAEKRLQAIKEFAELGSGFK
IAMRDLEIRGAGNLLGREQHGHIVSVGFEMYCRLLDEAVEELKTGKIVLPPPEPTIELTL
DAYLTGDYISDAMHKIEIYQRIAAIRQEAHLTELIDELIDRFGEPPLPVTNLLGVARLKN
LARQLGVRLIAERGGRVEISFGDTPNVADDGLVKARELFPGKLSFLPGPPDTMRLTTSRL
NLPLIEVLMKLFTCLSGVTDSK
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgggagaaaaaacaagtttaaggctattgaccgctttacctgaggacaaagcattacgc
caggctcaggcagcattttcgttacctgatggacagagtttgatttatggccttacaggt
acgcaaaagagtgtgtttctagcggctgcttttcaggcagctgcgcgcccaactataatt
atagcagctaatcatgaagcgattgatgtgtttagaactgactttgcggttctcttacca
gaagtgccgatagtagaactgccggcccttgatatggtgacctttgctgctgccgccaaa
agtgttgaactggcggcaaaacgcatggatgttttgaatcgtttggccagaggcgaaaag
ctgattgttttggctactgccgaagctgcgatgcaaaaggttctgcccaaacaagagttt
ttaaacagccgcataacaatacatagtgacagtgtggtaagccgggaagagcttatcggc
tcattagttgcatacagctatgaacgggtcgaccaagtagatagtgctggtcagtttagt
gtacgcggcggcattatcgatatatttgctgttaaccggagtttaccactccggcttgaa
ctgtttggtgacgaggttgattcactgcgtgaatttgatccggttagccagcgatcggta
caagatctggtattggccgatattatgccgttaacacaaaccgagcacagtgggaaagcg
gctgtatttgtgtcttatttaccggcaagtgctaccacaatacttgatgagccagcacgg
cttagggaacagatgaccaagctggttaaggaaaatcctgatagtaagcggcgggttttt
gcctgggccgagctggtagcagcttgccaggcatataatgtaatttatctatccttattg
ttgcaaaagattcctcatacgcagccaaccgagattattagcattacagccaaggggatt
gcgccttttcaccgacagattgagctgctgattgcggaaataaaaagctggcaggataaa
cggtataatattgtcatatttatgtccagtcaggataaggctgttaatattgagcggaat
ctagccgatgaggggattaccgcgattatgcctcagtccggggccatgccgcttataccg
ggtgctgttgtggtacttacaggcgcgctgtcaggtggctttgaattcccgcaggctagg
cttgtggtgctgactgagtttgatatcttcggacgccaaaagaaaaagcgtcggctccgc
gtgggcaaagaacagcaaattacttatttccgtgatatcaatcttggtgactatgttgtt
catgttaatcatggtattggcaaatatgttggggtagaaacattggaagtggggggggtt
cataaggactatctccatattcgctacgccggcgatgataaattatatgtgcccaccgat
caggtggggcagttacagaagtatattggttctgagggtgatgtgccccgccttagcaag
atgggtggcagcgactggctgaaggttaagaccaaagccaaagcggctgtagccgacatg
gccaaggagcttatcgcactttacgccaagcgtcagctgcaagtagggtatacttttggc
ccagacacaccttggcaacaggaattcgaggacgcgtttgcttatgaagaaacaccagat
caactgcaggctattgccgaggttaagcatgatatggaacagtcgcggcctatggatcgt
ctgttatgtggtgatgtgggctttggcaagactgaagtggctattcgcgctgcctttaaa
gctgttatgggtggcaagcaagtggcggtgctagtaccgacgactgtgcttgcacagcag
catttccagacctttagctcacgctttgccgattttggtactgtagttgacgttatcagc
cgttttcgcagcgcccgcgagcaaaaggccactttgcaaaaagtggcgatgggtcaagtg
gatgtccttattggcacgcaccgaattttgcagtcagatgtgatatttaaggatattggc
ctcttaattgttgatgaagaacagcgttttggtgtggcgcaaaaggaaaagatgaagagg
tggcgtgctaatctggatgtgcttactttaagcgctacccccatcccacgcacattacac
atgtcattggtgggggctcgggatatgagtattattgaaaccccacccgaggatcggttt
ccggtgcaaagctatgttgttgaatataatgaggaaattattcgtgaggccattgtccga
gaattgaaacgcggcgggcaagtgtattttgtttataaccgggtacaaactattgataaa
atacgtcagcgtctgacagaaatattgccagatgccaccattaaaacaggtcatggccag
atgccagaggaactcttagagcaggttatgcttgatttttatgaaggtcatgacgatgtc
ttactatgcacaagcattattgaaaatggattagatgtatctaatgccaataccattatt
atttatgatgccgatcatttcggtttgtctcagctgtatcaaatgcgcgggcgggttggc
cgctcacatcggatggcttatgcttactttacctatcgtcaggataaagtattaactgag
gtagccgaaaaacggctccaggccatcaaagagtttgctgagcttggttcgggtttcaaa
atcgccatgcgggatttggagatacggggagccggtaatcttttaggacgagagcagcat
ggccatattgtcagtgttggatttgagatgtactgccggttgttagatgaagctgttgag
gagctaaaaacaggtaaaatagtcttgccgccgcctgaaccgacaatagaacttacgctt
gatgcttatcttaccggtgattatatcagtgatgctatgcacaagattgaaatataccag
cgtatcgctgctattcgccaggaagcgcatttaactgaacttattgatgagcttattgat
cgctttggcgagccgccgctaccggttaccaatcttttaggtgttgcccggctcaagaac
ttggcacgccagttgggtgttcgattgatcgctgaacggggtgggcgtgtggaaatttcc
tttggtgatacgcctaatgtggctgacgacggcttagttaaagccagggaactttttccc
ggtaagttgtcctttcttcccggaccaccggataccatgcgccttactacttcccgccta
aacctgccgctaatagaggtattgatgaagttatttacctgtttgtcaggagttacagat
tcgaaataa
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