Sporomusa silvacetica: SPSIL_004190
Help
Entry
SPSIL_004190 CDS
T10425
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03020
RNA polymerase
Brite
Enzymes [BR:
ssid01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SPSIL_004190 (rpoC)
Transcription machinery [BR:
ssid03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SPSIL_004190 (rpoC)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SPSIL_004190 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XFO64317
LinkDB
All DBs
Position
449111..453079
Genome browser
AA seq
1322 aa
AA seq
DB search
MLDVNNFDSMRIGLASPEQILKWSHGEVKKPETINYRTLKPEREGLFCEKIFGPTRDWEC
HCGKYKRIRYKGIICDRCGVEVTRSKVRRDRMGHIELAAPVSHIWYFKGIPSRMGLILDV
SPRSLEKVLYFASYIVLEPGDTPLMKKQLLNENEYREHRDKYGSAFKVGMGAEAVKKLLE
ELDLEKMSRELRQELKEVSGQRKIRAIRRLEVTEAFRKSGNNPAWMIMDVVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKE
MALELFKPFVMKKLVNAGHAHNIKSAKRMVERVRPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLSEGRAIKIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARMLMLSAHNIL
STKDGRPVATPTQDMVLGAYYLTIEKEPENGKIRAFSSLNEGLLAYQHKVLTLHEKIKMR
LDGYGLVHTTLGRVIFNEVLPPELRHFSKEDDGWHLGKIMDKKQLGKLVADSYQTFGNAK
TAVVLDAVKRLGFHFACIAGITIAISDIKIPAAKKEILAAAETKVDTIDKQYRRGLITDD
ERYKKTIDLWTKATDDVTTALMNSLDRFNPVYMMANSGARGNIQQIRQLAGMRGLMADPS
GRIIDLPIKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIVRE
EDCDVVGLNLVRERARLAKSSAGAIDMLKDSLQGRVLAQDVLDPKTLDIILTQGTLLDED
ALRLIGENGVPEIMIEGQADEIEEDVGRAVAETIVLGAPEEKVRAALKEAMIREMLGKNT
TEAIKTRDGVELVPADTPFTEEHIEAVLASSVKEVKVRNNNVRGIEVEAITEGSGVIESL
KDRIVGRMAAEDIIDPATGETIVKISDLITEELAEKVVKVRDKVSIRSVLTCRSRYGVCI
NCYGRNLGTGHMVDVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVEELF
EARKPKRQAIITEVDGKVEVKEIKGMRRVTVYPADASLGEERVYPIPYGSRLIVSEGQMV
AAGDRLTEGAVNPHDILRVSGLKATQRYLVYEVQKVYKSQGVEINDKHIEVMVRQMLHKV
KVEEAGDTDLLPSEYIDLNTFEEENAKAIEAGGEPAIARPILLGITKASLATDSFLSAAS
FQETTRVLTEAAIKGKVDPLLGLKENVIIGKLVPAGTGMSRYRNIRLKKVVSEPVEEEFP
VE
NT seq
3969 nt
NT seq
+upstream
nt +downstream
nt
ttgttagacgtaaataattttgattcaatgcgtattggtttggcgtcgccggagcaaatt
cttaaatggtcgcacggtgaagttaaaaaaccagaaaccattaattaccgtacgttaaaa
cccgaacgagagggtttgttctgtgaaaagatttttgggccaactcgggattgggaatgt
cattgcggtaagtataagcggattcgctataaaggtattatttgtgatcgatgtggcgta
gaagtaactcgttccaaagtccggcgtgaccggatgggacatattgagttggctgcacca
gtctctcatatctggtattttaaaggtatacccagcaggatgggactcattttggatgtc
tcgccacgctcgttggaaaaagttttatattttgcttcctatattgtgcttgaaccaggc
gatacgccacttatgaaaaagcaacttttaaacgaaaatgagtacagggaacatcgggat
aaatatggcagcgcattcaaagttggcatgggtgcagaagctgtcaaaaagctgctggaa
gagcttgatttagaaaagatgagtcgtgaactccgccaggaactaaaagaagtaagcgga
cagcgtaaaattcgggcgattagacgtttggaagttacagaagcctttcgtaaatcagga
aataacccagcttggatgattatggacgtagtacctgtaattccaccggaattacgcccc
atggttcagttagatggcggacggtttgccacttccgacttaaatgacctgtaccgccgg
gtaattaaccgcaataaccgcctaaagagactgttagatttaggtgcacctgatatcatc
gtgcgcaacgaaaaacgcatgttgcaagaagccgtggatgcgcttatcgacaacggacga
cgtggtcgtccggtcaccggtcctggtaatcgtcctttaaaatctttgagtgatatgctt
aaaggcaagcaaggacgctttcggcaaaaccttttgggcaaacgggttgactattctgga
cgctcggttatcgtagttggtccggaacttaagttacaccaatgtggtctgcctaaagag
atggcgctggaactgtttaaaccttttgttatgaaaaagctggttaatgccggtcatgct
cataatattaaaagtgctaaacggatggtggaaagggttcgccctgaggtatgggatgta
ctggaagaggttattaaagaacatccagtactcctaaaccgtgcaccgactctgcacaga
cttggtattcaggcgttcgaaccggtattgtctgaaggccgggccattaaaattcatccc
ttggtatgtaccgcctacaatgcggactttgatggcgaccaaatggcagtgcatgtacca
ctatcggctgaggctcaggctgaggcacggatgcttatgctgtcagcccataatatctta
tccaccaaagatggcaggccagtcgctacgcctactcaggatatggtattgggtgcttac
tatctaacgattgaaaaagaacctgaaaatggtaaaatcagagctttttccagcttaaat
gaaggcttactagcttatcagcataaggtactaaccttacatgaaaaaataaaaatgcgt
ttagacggctatggtttggtacatacaacattagggcgagtgatttttaatgaagtattg
ccacctgagctcagacatttttctaaagaggacgatggttggcatttaggtaagataatg
gacaaaaagcaacttggtaaattagttgctgactcctaccaaacttttggtaatgctaaa
acagccgttgtattagatgctgtaaaacgccttggtttccactttgcttgtatcgccgga
atcacgattgcaatttcagacatcaagattccagcggccaaaaaagaaattttagcggct
gctgagacaaaggtcgacaccattgataaacagtaccgccgcggtttgattaccgatgat
gagcgctataaaaagactattgatctttggactaaggcaacagatgatgttaccacagcg
cttatgaacagcttggatcgctttaacccggtatatatgatggctaactccggtgcccgt
ggtaatattcagcagatacgtcagttggctggtatgcggggtcttatggctgatccttct
ggacgaatcattgacttgccgattaaagctaatttccgtgaaggcttgaccgtgttagag
tactttatctctactcatggagcacgtaaaggcttagcagatacggcacttaggacagcc
gactctggctaccttacccgtcgacttgttgatgtcgcccaagatgttattgttcgcgaa
gaagattgcgatgttgtcggacttaacctagtgcgggaacgggctcgtttagctaagtca
agtgctggggcaattgatatgctgaaagatagcttgcaaggtagagttttggctcaggat
gtattagatcccaaaacattagatataattttgacccaaggaacattgcttgacgaagat
gccttgcgcttaattggcgaaaacggtgttccggaaatcatgattgaaggtcaggcagat
gaaatagaagaagacgtcggtcgtgcagttgctgaaaccattgttcttggtgcaccagaa
gaaaaagtacgcgctgctctcaaagaagctatgattcgcgaaatgcttggcaaaaataca
acagaggccatcaaaaccagggatggtgtcgagcttgttcctgcagatacgccgtttacc
gaagagcatattgaggctgttttagctagctctgttaaagaagtaaaagtgcggaataat
aatgttagaggaattgaagttgaggctatcaccgaaggctctggtgtaattgaatcactt
aaggatcgaatcgtcggcagaatggcggcggaagatattattgatccagccactggtgag
actattgtcaagattagtgacctgattacggaagaattggctgagaaggttgttaaagta
cgtgataaggtttccatccgctcagtactcacttgtcgttcccgttatggtgtatgtatt
aattgctatggtcgtaacttgggcacaggccacatggtcgatgtcggtgaggctgtcggt
attattgctgctcagtctatcggtgaaccaggtactcagcttacaatgagaacgttccat
accggcggtgttgctggcgatgacattacccagggtttgccgagggtagaagaattgttc
gaggcccgtaagcccaaacgtcaggctataattactgaagttgacggtaaggtggaagta
aaagaaatcaaaggtatgcgtcgagtcactgtttatccggcagacgcgtccttgggtgaa
gagcgtgtatacccgataccctatggctcaagactaattgtcagcgaaggtcaaatggtt
gcggcaggtgatcgtctgactgagggtgccgttaatccgcacgatattttgcgggttagc
gggctgaaagccacgcaacggtatttggtgtacgaagttcaaaaagtatataaatcccaa
ggtgttgaaattaacgataaacacatcgaggttatggttcgtcagatgctccacaaagtc
aaggtggaagaagcaggcgacactgatcttttgccaagcgagtatattgatttgaatacc
tttgaagaagaaaatgctaaggctattgaagctggcggcgagcctgccattgccagaccc
attcttctcggtattacaaaagcctcgctggccactgattccttcttatctgcggcttcc
ttccaggagaccacccgcgtgctcactgaagctgcgataaaaggtaaggttgatccacta
ctgggacttaaggagaatgttataattggtaaactcgttcctgctggtacaggcatgagt
cgttaccgtaatattcgattaaaaaaagttgtttccgagccggtggaggaagaattccct
gttgaataa
DBGET
integrated database retrieval system
