Sporomusa silvacetica: SPSIL_022910
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Entry
SPSIL_022910 CDS
T10425
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ssid Sporomusa silvacetica
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ssid03032
]
SPSIL_022910 (topA)
03400 DNA repair and recombination proteins [BR:
ssid03400
]
SPSIL_022910 (topA)
Enzymes [BR:
ssid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SPSIL_022910 (topA)
DNA replication proteins [BR:
ssid03032
]
Prokaryotic type
DNA Topoisomerases
SPSIL_022910 (topA)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SPSIL_022910 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
XFO66141
LinkDB
All DBs
Position
2300234..2302432
Genome browser
AA seq
732 aa
AA seq
DB search
MSKALVVVESPAKAKTIEKFLGKNYTVKASMGHLRDLPKSQFGVNLENGFEPKYINIRGK
GDLIKSLKGAAKNADIVYLATDPDREGEAIAWHLAHILNIPEQTTCRIEFNEITKTAIQQ
AVKNPRPINLPRVYAQQARRILDRIVGYKLSPLLWRKVRKGLSAGRVQSVAVRLICDREK
EIQAFTPEEYWTIIAKLKEKTNSKAFDAELVAIDGQKSVINNEVQAESIVSELIQAEYIV
NEVKKRERKRNPQPPFTTSSLQQEAARKLGFTSRKTMIIAQQLYEGLTIGRMGQVGLITY
MRTDSTRVAEIAQQEARSYVEKKFGLNYLPAKAPTYANKKSQDAHEAVRPTTLELTPDAV
GTSLSKDQLKLYTLVWERFIASQMTSAIYDTLTIEITAGRYKLRSNGSQIKFPGFLAAFS
GAIGKSKEVEQTADSDLDKETTLPALLAGQVLKLNKLDPKQHFTEPPPRYTEASLVKVLE
EKGIGRPSTYAPTIETIVDRGYVERIEKKFHPTELGFVVLDLLKQYFDKILDVEFTAGME
DKLDDIAEGDASWLTVLEEFYAPFAQDLSLAEEAIGHVELPVEVSDVPCENCGQMMVVKQ
GRYGNFLACPGFPACRNTKPILKDIGVKCPKCGGSIVERHTKRRRVFYGCEKYPECDFNT
WDLPLKENCQVCGAYMVRHKLKNGDFSSICSNENCSSRQAADSNETAKNVEEKEVQATAK
KKPAANRRKNNG
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaagctctagttgtagtagaatccccggctaaagccaagacaatagaaaagttt
cttgggaaaaattatacagtcaaagcctctatgggacatttgcgtgatttgcctaaaagt
caatttggtgttaatcttgaaaatggctttgaaccaaagtatattaatatccgaggtaaa
ggcgatcttataaaaagcctaaaaggagcagccaaaaatgccgatattgtttatctagcg
acagacccggatcgcgaaggggaagctattgcatggcatttggcgcacatcctcaatatt
ccagagcaaactacctgccggattgaatttaacgagatcacaaaaacggctattcagcaa
gctgtcaaaaacccacgtcccattaatttgccgcgggtttacgcccaacaagccaggcga
attctagaccggatagtgggctataagctgagtccacttttgtggcggaaagtgcgtaag
ggattaagtgctggccgggtacaatcagttgccgtccggctaatttgtgatagagaaaaa
gagatacaggcatttactccggaagaatattggacgataatagctaaacttaaagaaaag
acgaattcaaaagcgtttgatgctgaactagtagctattgatggccaaaaaagtgttatt
aataacgaggtgcaagcagaaagcattgtcagcgagttaattcaagcagagtacatagtg
aatgaagttaaaaaacgggaaagaaagcgtaatcctcaaccgccctttactaccagtagt
ttgcagcaagaggctgcccgtaaattgggatttacttcccgtaaaaccatgataattgcg
caacaattgtatgaagggcttactattggtcgtatggggcaagttggtcttattacctat
atgcgtaccgattctacccgagtggctgagattgctcaacaggaagctcgaagttatgtt
gagaagaaatttgggttaaattatctgccggcgaaggcaccaacctacgctaataaaaaa
tctcaggatgcccatgaggctgttaggccaactaccctggaattaactccagatgccgtt
ggcactagcttgagcaaagatcagttaaagctctatacacttgtctgggaaagattcata
gctagtcagatgacatctgcgatttatgatacacttactatcgagattactgctggaagg
tataaactcagatctaatggatcacaaataaaattcccgggatttttagcagcatttagt
ggtgcaattggtaagagtaaagaggtagaacaaactgctgatagtgatttagataaggaa
accactttacctgcattactagcaggacaagtgttgaaacttaacaagctagaccctaaa
caacattttaccgaaccaccgcctcgctacacagaggcatcattggtcaaagtcttagag
gaaaaaggaattggacgtcccagcacctatgcaccaacaatcgagacaattgttgaccgg
ggatatgtcgagagaattgagaaaaaatttcatcctaccgagctgggatttgtggtactt
gaccttctaaagcaatactttgataaaattctagatgttgaatttactgctggaatggaa
gataagttagacgatattgccgaaggtgatgcctcttggttaactgtattagaagaattt
tatgccccttttgcgcaagatctaagtttggcagaagaagcgattggccatgtcgaatta
cctgtcgaggtatctgatgttccctgtgaaaattgtggtcagatgatggtcgttaaacag
gggcgatatggtaatttcttagcatgccccgggtttccggcttgccgcaatactaagcca
attttaaaagatattggtgttaagtgtcccaaatgcggcggttctattgttgaacgtcac
actaaacgccgacgagtcttttatggctgtgagaaatatccggaatgtgattttaatacc
tgggatctgccattgaaagagaattgccaagtatgtggggcatatatggtcagacataaa
ttgaaaaatggtgatttttctagtatttgtagtaatgagaactgttcgtctcgccaagca
gctgatagcaatgaaaccgctaagaacgtagaagaaaaagaagtacaggcaacggcgaaa
aagaagcctgcagctaaccggaggaaaaataatggataa
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