KEGG   Sporomusa silvacetica: SPSIL_024310
Entry
SPSIL_024310      CDS       T10425                                 
Symbol
hfq_1
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
ssid  Sporomusa silvacetica
Pathway
ssid02024  Quorum sensing
ssid03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ssid00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SPSIL_024310 (hfq_1)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    SPSIL_024310 (hfq_1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ssid03019]
    SPSIL_024310 (hfq_1)
   03036 Chromosome and associated proteins [BR:ssid03036]
    SPSIL_024310 (hfq_1)
Messenger RNA biogenesis [BR:ssid03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     SPSIL_024310 (hfq_1)
Chromosome and associated proteins [BR:ssid03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    SPSIL_024310 (hfq_1)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: XFO66281
UniProt: A0ABZ3IKR7
LinkDB
Position
2448633..2448893
AA seq 86 aa
MTNKVINLQDSFLNQVRKENMPVIIYLVNGFQLRGAVRGFDNFTVIIENDGKQQLVYKHA
ISTITPFRPIAANMHEKKDEVVKADK
NT seq 261 nt   +upstreamnt  +downstreamnt
ttgacgaacaaagtcattaatctacaagacagttttttaaatcaagtacgaaaagaaaat
atgcctgtaattatatatttggttaatggatttcaattacgtggggctgtaaggggattt
gacaattttaccgtaattattgaaaatgacggtaaacagcagttggtttacaaacatgct
atttcaaccataaccccatttcgtccgatagctgccaatatgcatgagaagaaggatgag
gttgttaaagccgataaataa

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