Sporomusa silvacetica: SPSIL_024310
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Entry
SPSIL_024310 CDS
T10425
Symbol
hfq_1
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
ssid Sporomusa silvacetica
Pathway
ssid02024
Quorum sensing
ssid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSIL_024310 (hfq_1)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SPSIL_024310 (hfq_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssid03019
]
SPSIL_024310 (hfq_1)
03036 Chromosome and associated proteins [BR:
ssid03036
]
SPSIL_024310 (hfq_1)
Messenger RNA biogenesis [BR:
ssid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
SPSIL_024310 (hfq_1)
Chromosome and associated proteins [BR:
ssid03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
SPSIL_024310 (hfq_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
LSM
Motif
Other DBs
NCBI-ProteinID:
XFO66281
UniProt:
A0ABZ3IKR7
LinkDB
All DBs
Position
2448633..2448893
Genome browser
AA seq
86 aa
AA seq
DB search
MTNKVINLQDSFLNQVRKENMPVIIYLVNGFQLRGAVRGFDNFTVIIENDGKQQLVYKHA
ISTITPFRPIAANMHEKKDEVVKADK
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
ttgacgaacaaagtcattaatctacaagacagttttttaaatcaagtacgaaaagaaaat
atgcctgtaattatatatttggttaatggatttcaattacgtggggctgtaaggggattt
gacaattttaccgtaattattgaaaatgacggtaaacagcagttggtttacaaacatgct
atttcaaccataaccccatttcgtccgatagctgccaatatgcatgagaagaaggatgag
gttgttaaagccgataaataa
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