Sporomusa silvacetica: SPSIL_032450
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Entry
SPSIL_032450 CDS
T10425
Symbol
ligD_2
Name
(GenBank) Multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SPSIL_032450 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssid03400
]
SPSIL_032450 (ligD_2)
Enzymes [BR:
ssid01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SPSIL_032450 (ligD_2)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SPSIL_032450 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
XFO67066
LinkDB
All DBs
Position
3253617..3254543
Genome browser
AA seq
308 aa
AA seq
DB search
MPSDSKLKTTLEIAGRKLKVSNLAKVFYSVTGFTKGEMLNYYIRIAPLILPHLANRPLTM
KRYPNGAQGKFFYQKECPAPRPDWIKTIPIWSSSNNRTINFCNATDLPTLVWAANLAALE
LHTSLSVTPKVNQPSLLVFDLDPGLPATIVDCAQVGLLLKDYFDKHGLQSFPKTSGSKGL
QIYIPLNTPVSYDMTKSFARILATRFQEKYPNLIVANMKKVLRTGKVFIDWSQNDEHKTT
VCVYSLRARERPTISTPVTWEEVLDVLEQKNPNLLSFEASQVLDRTDKLGDLFAPVLTLK
QKLPVIQK
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
gtgcccagtgacagcaaactaaaaacaacccttgaaatagcgggacgtaaactgaaagtc
agcaaccttgctaaagtattttattccgttacaggctttactaaaggagaaatgctcaac
tactacatccgcattgcgccgctcatcctcccccacctcgccaacagaccactgactatg
aaacggtaccccaacggtgcacaaggcaagtttttctaccaaaaagaatgtccagcccct
cgtcctgattggatcaagaccattcccatctggagtagcagtaataatcgcactatcaac
ttttgtaacgccactgatttaccgaccttagtatgggcggccaacttggcagcgcttgaa
ctgcatacctccctgtcagtaacccccaaagtaaaccaaccttctttattagtctttgac
ctcgacccaggtctgccagctactattgtggactgcgcccaagttggcctgcttttaaaa
gattattttgataagcatgggctgcagagtttcccgaaaacctcaggttccaagggtcta
caaatatatatacccctcaatacaccagtaagctatgacatgacaaaaagctttgcccga
atacttgccacccgttttcaggaaaaataccccaacctgattgttgccaatatgaagaaa
gtactgcgtacaggcaaagtctttatcgattggagtcaaaatgatgaacacaaaacaact
gtttgtgtctattcactccgtgctagggagcgccccactatttctacccccgtaacctgg
gaagaagttctcgacgtccttgaacaaaaaaatcctaatttgctaagctttgaagcctcc
caggtattagatcgaactgacaaactaggcgatttatttgccccagtgcttactctcaaa
caaaaactgccagttatccaaaaatga
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