Sporomusa silvacetica: SPSIL_036430
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Entry
SPSIL_036430 CDS
T10425
Symbol
rlmCD
Name
(GenBank) 23S rRNA (uracil-C(5))-methyltransferase RlmCD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
ssid Sporomusa silvacetica
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ssid03009
]
SPSIL_036430 (rlmCD)
Enzymes [BR:
ssid01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
SPSIL_036430 (rlmCD)
Ribosome biogenesis [BR:
ssid03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SPSIL_036430 (rlmCD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
Methyltransf_15
Methyltransf_4
MTS
Methyltransf_11
PrmA
UPF0020
Ubie_methyltran
RrnaAD
Methyltransf_12
PCMT
N6_N4_Mtase
Methyltransf_23
TPMT
Motif
Other DBs
NCBI-ProteinID:
XFO67444
LinkDB
All DBs
Position
complement(3673709..3675094)
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AA seq
461 aa
AA seq
DB search
MANKASSVPVEKGQTDTIDITGLGHSGEGVGRYQDFTVFIPGALPGETVTAVITTVKKTY
AIGRLATVQIPSPHRIAPECGIYSQCGGCQLQHLNYKEQLNCKRQQVVDTITRIAKLPGV
LVHPTLGAPSPWYYRNKMQFPVGRKNGKVVVGCYSQGSHDIVDTENCLIQHQVNNDIVRE
VRNAIEKLGIEPYDERTGQGIIRHVLGRVGTATGQVMIVLVTATEQLPQRQALIECLQTK
IAGLVSIVQNINSKCTNIIMGHKTRTLWGQDTITDKLGEFTFAISARSFFQVNTAQAEVL
YNQAVKYAGLTGTETVIDAYCGTGTITLFLARQAAKVYGIEIVEPAILDARQNASNNNVQ
NVEFLVGDAVAVMPRMFKQGIKPDVIVVDPPRAGCEQKVLETFASMEPKRIVYVSCNPAS
LARDLAVLNDLGYQTKEIQPVDMFAQTFHVEAIALIQRADT
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaacaaagcttcatcagttcccgtagaaaagggacaaaccgatactattgatata
accggtctcggacatagtggtgaaggcgtaggacgttatcaggacttcacagtatttatt
ccgggtgccttgcctggagaaacagtgacggcagtcattactaccgtcaaaaagacctac
gccattggccgtctggcaacagttcaaatcccgtcgccccaccgaattgcccccgaatgc
gggatatacagccaatgtggtggctgccagctgcagcacttgaactataaagaacagctc
aattgtaaacggcagcaggttgttgatactattacccgtattgctaagctgccgggagtt
cttgttcatcctactttaggcgcgcccagtccctggtattaccgcaataaaatgcaattt
cctgtagggaggaaaaacggcaaagtagtggtaggctgctattcccagggaagccatgat
attgttgataccgagaactgccttatccagcatcaagtcaataacgacattgtcagggaa
gtccgaaatgcaattgaaaaacttggcattgagccttatgatgagcgtaccggccagggc
attattcgccatgtcctggggcgggtaggcacagcaaccggccaagtcatgatcgtattg
gtaacggctacagagcaattgcctcagcgccaagccctcattgaatgccttcaaaccaag
atagctgggcttgtaagcattgttcaaaacattaattccaagtgcaccaatatcattatg
ggtcacaaaacccgtaccctttggggacaagacaccataaccgataaacttggcgagttc
acctttgccatatcggcccggtcatttttccaggtaaacacggctcaggctgaggtactc
tataaccaagccgtcaagtacgccggactgaccggcactgaaaccgtcattgatgcctac
tgcggtaccggtactatcaccctttttctggcccgtcaggcagccaaagtttacggtatc
gaaattgtcgaaccggctatcctcgacgcccggcaaaacgccagcaataataatgtccaa
aacgtagagttccttgtcggcgatgccgttgctgtcatgccacgcatgttcaaacaaggc
atcaaaccagatgtcattgttgttgatccgccccgggcgggctgtgaacaaaaggtactg
gagaccttcgcaagcatggaacccaagcgaattgtctatgtatcctgtaatcccgcttca
ctagcgcgggatttggcggttttgaatgacttaggttaccagacaaaggagattcagcca
gtggatatgtttgcacagacatttcacgtcgaggcgatagcgttgatacaaagagcagat
acgtag
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