Sporomusa silvacetica: SPSIL_044540
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Entry
SPSIL_044540 CDS
T10425
Symbol
rep_2
Name
(GenBank) ATP-dependent DNA helicase Rep
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03420
Nucleotide excision repair
ssid03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SPSIL_044540 (rep_2)
03430 Mismatch repair
SPSIL_044540 (rep_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssid03400
]
SPSIL_044540 (rep_2)
Enzymes [BR:
ssid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SPSIL_044540 (rep_2)
DNA repair and recombination proteins [BR:
ssid03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SPSIL_044540 (rep_2)
MMR (mismatch excision repair)
Other MMR factors
SPSIL_044540 (rep_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
SLFN-g3_helicase
AAA_11
DEAD
NACHT
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
XFO68234
LinkDB
All DBs
Position
4556965..4559133
Genome browser
AA seq
722 aa
AA seq
DB search
MSNHPDFPQEQQHLAATIEAMKQVINDLEQDMDDRVHKINQSLSKKDEVSAYVHSLMKSD
HAIKVSDISKALDNPYFGRVDFREDGTESFEPYYIGRTKVAKLDIENSKDILVFDWRDPI
STIFYECQDGRATYEVLDRYTYTGEVSLKRQYKIEDGCLISMSEDNILSKLMSRQQESLI
ADPFLLERLLTGAGDRLKDIVTSIRSEQNQIIREPLNQVTIIQGVAGSGKTTIGLHRLSY
LLYNEKLKPEKLVIVAPNKVFLDYISELLPEIDAQDVRQTTFPDLATTIMQIEPVIFQAI
TPSAELTAVSRWKGTPEFINIMEAFLDKKLQKFCEKLTSLSLFDNQLTITREQQLEKVIE
GAGVPYNERLQSLQKYIRFRVRNFIEVYEANYKRGKAHADEKTAAGYAAEGKDFMEKHFA
KLPFLELLTGYTKLFHDKQVWRKVKPHGTTIDVLLSHTLTLLTANQVERDDLAPLCYFKY
LLDGFSHIEKFDHIAIDEGQDSNLLEYIILSRLSRNTSFTIMGDMSQAIHTDRGLTSWQQ
LLKAVFAEAKCRYYEVNFSYRSAKEIVELFNKVLPSGRSKAIPVYEIGRQPVIESVQSAL
AGLKRTLEIIEEYQVLGCKSIGIFTKGESDSQKLHNGLRQAAPHLTSLNLITTNVLSYHG
GITIAPILLAKGLEFDGVIIWNASDKKFTADFHDAKLLYVALSRAMYYLYILHQGKLTPL
LT
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccatcccgattttccacaagagcaacagcatttagcggctactattgaagcc
atgaaacaagtaatcaatgatttagagcaggatatggatgaccgtgtacataagatcaac
cagtcactgtccaaaaaagacgaggtcagcgcttatgttcattcgctcatgaaaagcgac
catgctatcaaagtatctgatatctccaaagcacttgataatccctactttggccgggta
gactttcgtgaagacggaactgaaagctttgaaccctattatattgggcgaaccaaggta
gccaagctggacattgaaaatagtaaagatattctggtctttgactggcgcgaccctatc
tccaccattttttacgaatgtcaggatggacgcgctacctacgaagtactggaccgctac
acctatactggtgaggtcagcctcaaacggcaatacaagattgaagacggctgtctaatc
tcaatgtcagaggataatattctcagcaaactcatgtcccgccagcaagaatcgctcatt
gctgaccctttcctcttggaacgcctgttaaccggggccggagatcggcttaaagatatc
gttacctctatccgctctgaacaaaatcagattatccgggagccgctcaaccaagtaacc
atcattcaaggggtagccggttcaggcaaaactaccatcgggttacatcgtttgtcatat
ctgctatataatgaaaaactcaagccggaaaaattggtcattgtcgcccctaataaagtc
tttttggattacatctctgagctcttgcctgaaattgatgcccaggatgttcgccagacc
actttccctgatctggcaacaaccattatgcaaatagaacctgtcatctttcaggcaata
accccatcagccgaactgaccgcagtatccagatggaaaggtactccggaattcatcaac
attatggaagccttcttagataaaaagctgcaaaaattctgtgaaaaacttactagcctc
agcctatttgacaatcagctaaccatcaccagagagcagcaattggaaaaagtaattgaa
ggggctggcgtgccttataatgaacggctgcagtcactgcaaaaatatatccgtttccgg
gttagaaactttattgaagtctatgaggcaaactataaacgcggcaaggcgcatgctgac
gaaaagacagcagccggctatgccgctgaaggtaaagattttatggaaaagcattttgcc
aaactgccttttctagagctattgaccggctatacaaagctttttcatgacaaacaagtc
tggcgcaaagtcaaaccgcatggtaccaccattgacgtcctgctttcccatacacttaca
ttactaaccgccaatcaagtggagcgcgatgacctggcgccgctatgttattttaaatat
ttgcttgatggcttttcccatatcgaaaaatttgaccatattgccatagacgaggggcaa
gatagtaacctattagaatacatcatcctctcccgcttgtcccgcaatacctcctttacc
attatgggtgatatgtcgcaggccattcataccgaccgaggacttaccagttggcagcag
ctgttgaaagcggtatttgccgaagctaaatgccgttattacgaagtcaatttcagctac
cgttctgccaaagagattgtcgagctattcaacaaagttctaccctcaggccgttcaaag
gccatccccgtctacgagattggccggcaaccagttatcgagtcagtgcaatccgcgctg
gcaggcctcaagcgcacgcttgaaattattgaggaataccaagtcctaggctgcaaatct
attggcatatttaccaaaggggaaagcgacagccaaaaactacataacggcctacgacag
gccgccccccaccttaccagcctcaatctgatcaccactaacgtccttagctatcacggc
ggtattacaattgctcccatccttttagccaaaggcctggaatttgacggtgtcattatc
tggaatgcctcagataaaaagttcacggctgactttcatgatgccaaactactatatgtc
gccctgtcgcgagccatgtattacctgtatatcctgcaccagggcaagctcactccgctg
cttacgtag
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