Sporomusa silvacetica: SPSIL_044750
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Entry
SPSIL_044750 CDS
T10425
Symbol
cshA_2
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSIL_044750 (cshA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssid03019
]
SPSIL_044750 (cshA_2)
03009 Ribosome biogenesis [BR:
ssid03009
]
SPSIL_044750 (cshA_2)
Enzymes [BR:
ssid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSIL_044750 (cshA_2)
Messenger RNA biogenesis [BR:
ssid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSIL_044750 (cshA_2)
Ribosome biogenesis [BR:
ssid03009
]
Prokaryotic type
rRNA helicases
SPSIL_044750 (cshA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
XFO68255
LinkDB
All DBs
Position
4586239..4587660
Genome browser
AA seq
473 aa
AA seq
DB search
MEKFKELGISDLTIRALSDMGFEEPTPIQEQAIPILLAGKDLVGQAQTGTGKTAAFGIPL
LENIGKSVGAIFGIVLTPTRELCIQVAEELNKLGQFSNVRTLPIYGGQDIQRQIKSLQRK
PQIIVATPGRLMDHMDRRTIKLNDIKMVVMDEGDEMLNMGFIEDIEKILSATPDSRQTLL
FSATMPRQIQNLAQRFLKDPALISIKSKEVTVPLIEQYYMEVLDRQKFDVFCRLLDIQSP
ELSIVFGRTKRRVDELAEGLKKRGYSAEGIHGDLTQSKRDSVLRQFREGTTDILVATDVA
ARGLDVSGVTHVYNFDIPQDPESYVHRVGRTGRAGQTGIAMTFVIPRELDHLRSIERLTK
RKIVRMPVPTVTEAIEGQQRLAVEKLLNQIEDGGLEQYRGRAEELLTETDSVSLLSAALK
LLTKEPDGTPIKITEEAPLRSRSYGGGKRRPQENRKPASAGGKPRYKSNGFRK
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
ttggaaaaatttaaagagctaggaattagcgatttaacaatacgcgcccttagcgatatg
ggctttgaagagccgacaccgattcaggagcaggctatcccgatattacttgccggtaaa
gatttggttggacaggcccaaaccggtactggtaaaacagccgcatttggaattccctta
ttagaaaacattggtaaaagtgttggagctattttcggaattgtgttaaccccaacccgt
gaactgtgcattcaggtggccgaagaactcaacaaacttgggcagttctcaaatgtacgg
accctccctatctatggcgggcaggatattcagcgtcaaattaaatccttacaaaggaaa
ccgcaaatcattgtcgctacccctggtcgactgatggaccatatggatcgccgtacaatt
aaacttaacgatatcaaaatggtagttatggacgaaggcgatgaaatgctcaacatgggc
ttcatcgaggatattgagaagatattgagcgctacgcctgattcccgccaaactttgctc
ttttcggctaccatgcctcgtcagattcaaaacttggcccagcggtttttaaaggacccg
gcacttatcagcatcaagtccaaagaggtaactgttccgctcattgagcaatattatatg
gaagtacttgacagacaaaaattcgacgtattctgccgcctcctggatatccaatcacca
gaactgtcgattgttttcggcagaaccaaacgccgggtagatgaactggccgaagggttg
aaaaaacgtggttattcagctgagggcattcacggcgatcttacccaatccaaacgtgat
tctgtcctgcgccaattccgcgaaggcactaccgatattctcgttgctaccgatgtggct
gcccgcggcttagacgtcagcggcgtgacccatgtttataactttgatattccacaagat
ccggaaagttatgtccaccgggttggtcgtacaggccgcgctgggcaaaccggtattgct
atgacctttgttatcccccgggaactagatcatttgcgctcaattgaacgactgaccaaa
cgtaagattgtacggatgcctgtacctaccgtaactgaggctatcgaaggtcagcagcgc
ttagctgttgaaaaattgctcaatcagattgaagacggcggtcttgaacaataccgcgga
cgggccgaagaactgctcaccgaaacagattctgtttccctgctgtcggcagccctaaaa
ctattgaccaaagagccagatggcactccaattaaaattactgaagaagcaccgttacgc
agccgttcctacggcggcggcaaacgcagaccgcaggaaaatagaaaacccgcctctgcc
ggtggcaaaccgcgttataaatcaaacggctttagaaaataa
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