Sporomusa silvacetica: SPSIL_049490
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Entry
SPSIL_049490 CDS
T10425
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssid Sporomusa silvacetica
Pathway
ssid03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssid00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SPSIL_049490 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssid03019
]
SPSIL_049490 (dbpA)
03009 Ribosome biogenesis [BR:
ssid03009
]
SPSIL_049490 (dbpA)
Enzymes [BR:
ssid01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SPSIL_049490 (dbpA)
Messenger RNA biogenesis [BR:
ssid03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SPSIL_049490 (dbpA)
Ribosome biogenesis [BR:
ssid03009
]
Prokaryotic type
rRNA helicases
SPSIL_049490 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
XFO68726
UniProt:
A0ABZ3ISN0
LinkDB
All DBs
Position
complement(5067491..5068939)
Genome browser
AA seq
482 aa
AA seq
DB search
MDNNGFDKCKFSQEIVQALEDLGFETLTEVQQQVIPLALADTDVIVRSQTGSGKTAAFAI
PVCEKIEVEQRYPQALVLTPTRELAVQLKQDIANIGRFKKIRCVALFGRQPMEAQKRELK
QRVHVIVGTPGRTFDHIVRKNVNLDELKYLIIDEADKMLDMGFIDQVEAIVKMLPINRVT
MVFSATMPDKIQEICNQYLRNPVKIEVDSEIPPAELIQQACYEVQDSEKINLALKIIYTK
RPDSCLVFCNTRERVEMLFDKMKKEGVHCGSLHGGMEQRERLQAMQSFKRGEFSLLIATD
VAARGIHVDGIALVINYDIPVDNESYVHRIGRTGRAGKEGMAITFVTPDERSSLAEIEQY
IDYQIPRQETPTVEAAESGKLIFDKNKAMPNYKSDKSDNLNKNITRIRINAGKKTKMRPG
DILGAITNIAGVSAADTGIIDIQDTCSYVEILGGKGDLVMEALLHTKIKGKVHTIKKVNI
FP
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggataataacggttttgataaatgcaagtttagccaagaaatcgtgcaagcgctagaa
gatttagggtttgaaacacttactgaggttcagcaacaggtaatacccttagctcttgcc
gatacggatgttatagtaagatcccagacaggcagcggcaagacagctgcttttgccatt
ccggtttgcgaaaaaatagaagtggaacaaaggtacccccaggcacttgttcttacgcca
accagagaattggcggtacaattaaaacaggatatcgctaacattggcaggtttaaaaaa
ataagatgtgtggctcttttcggtagacaacctatggaagcacaaaaaagagagttgaaa
caaagggtacatgttatcgtcggtacaccggggagaacatttgaccacattgtaagaaaa
aatgttaatctggacgagctcaaataccttattatcgatgaagcagataaaatgctggac
atgggctttatcgaccaggtcgaagcaatagtaaaaatgttgccaattaatagggtaact
atggtattttcggcaactatgccggacaaaattcaggaaatctgcaatcaatatctgcgt
aatccggtaaagattgaagtcgattcagaaattcctcctgccgagttgattcagcaggca
tgttatgaggtccaagatagtgaaaaaatcaaccttgcgctgaaaataatttatacgaag
cgaccagatagttgtctggtattttgtaacaccagagaaagagtagaaatgctatttgac
aaaatgaaaaaggaaggagttcactgtggcagcttgcatggtggcatggaacaaagggag
cggttacaggcaatgcaaagctttaagagaggcgagttttcattactgattgctactgat
gtggcagcaagaggtattcacgtcgatggtatcgctcttgttatcaattatgatatacct
gtagataatgaaagctatgttcatcgaattggcaggactgggcgggctggaaaggaaggt
atggcaattacgttcgtaactccggatgaacgcagttcgttagcggagatagagcaatat
attgattatcagataccgcggcaagaaactccgacagtcgaagcagctgaaagcggcaag
ctgatttttgataaaaataaggctatgcctaattataaaagcgataaaagtgacaattta
aataaaaatataactaggattcggatcaatgccgggaaaaagacaaaaatgagacctggc
gatatacttggcgccattacgaatattgccggagttagtgcagcagataccggcattatc
gatattcaggatacttgttcctatgttgagattcttgggggaaaaggggatcttgtaatg
gaggcactcttgcatacgaagataaaagggaaagtgcatacgataaagaaagtgaatatt
tttccatag
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