Solibacillus silvestris DSM 12223: SOLI23_03980
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Entry
SOLI23_03980 CDS
T04506
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOLI23_03980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssil03019
]
SOLI23_03980
Messenger RNA biogenesis [BR:
ssil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOLI23_03980
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
AMO84768
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Position
853160..854713
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AA seq
517 aa
AA seq
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MEMILPALLGFAVGVAVIYFYMKNVNDSKVTGAKHVAEQIVEDAKREADALKKEALLEAK
DETHKFRTEAENDIRDRRGELQKQENRLLQREENLDRKDETLNKREISLERKEEALASRQ
QHIEQMESKVEQLVASQKTELERIAALTREEAKEVILKEVENELSTDIAVMTKESELRAK
EESDKKAREILSLALQRFAADHVAETTVSVVNLPNDEMKGRIIGREGRNIRTLETLTGID
LIIDDTPEAVILSGFDPIRRETARLALEKLVQDGRIHPARIEEMVEKSRREVDEQIRETG
EQTTFEVGIHNLHPDLMKILGRMKYRTSYGQNVLKHSIEVAHLAGLLAAELGEDVTLARR
AGLLHDIGKAIDHEVEGSHVEIGVELATKYKEHPVVINSIASHHGDTEATSVIAVLVAAA
DALSAARPGARSETLENYIRRLEKLEEISESYDGVEKSFAIQAGREVRIIVQPEKIDDLA
SHRLARDIRKRIEEELDYPGHIKVTVIRETRSVEYAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgatactccctgctttgctaggattcgctgtcggtgtcgctgttatctatttc
tacatgaaaaacgtgaatgattcaaaagtgactggtgcaaagcatgttgccgagcaaatc
gtggaagacgcgaaacgtgaagcggatgcactgaaaaaagaagcactgcttgaagcaaag
gatgaaactcacaaatttcgtactgaagcggaaaatgacattcgtgaccgtcgtggagaa
cttcagaaacaagagaaccgtttattgcaaagagaagaaaaccttgaccgcaaagatgaa
actctgaacaaaagagagataagcttagagcgtaaggaagaagctctggcaagcagacaa
cagcatattgaacagatggaaagcaaagtagaacaacttgttgcaagtcaaaaaactgag
cttgagcgcattgcagctctgacgcgcgaagaagcgaaagaggttatcttgaaggaagtt
gaaaacgaactttctacagatatcgctgtaatgacgaaagaatcagaattgcgtgcaaaa
gaagaatcagacaaaaaggctcgagaaattttatcacttgcattacaacgctttgcagct
gaccatgttgcagaaacaacagtgtccgttgtaaatctgccaaatgatgagatgaaaggc
cgcattatcggtcgtgaaggccgtaacatccgtacattagaaacgcttacaggtatcgat
ctgattattgatgatacgcctgaagcagttattttatccggctttgatccgattcgccgt
gaaacagctcgtcttgcattagaaaaactagttcaagatggtcgtattcacccggcacgt
atcgaagaaatggttgaaaagtctcgccgtgaagtggacgaacagatccgcgaaacaggt
gagcaaacaacatttgaagtaggtattcataacctgcatccggatttaatgaagatctta
ggtcgtatgaaataccgtacaagctatggtcaaaatgtattaaaacactcaatcgaagta
gcccacttagcaggattacttgctgctgaacttggcgaagatgtaacattagcgcgtcgt
gcaggtttactgcatgatatcggtaaagcgattgaccatgaagtagaaggaagccacgtt
gaaatcggtgtggaactggcaacgaagtataaagaacatccagttgtgattaactcgatt
gcatcccaccatggtgacacagaagcaacttcagttatcgctgtacttgtagcagcagct
gatgcattatcagcagcccgcccaggtgcccgcagtgaaactttagaaaactatattcgc
cgccttgaaaagctggaagaaatttcggaaagctatgacggcgttgaaaaatcattcgca
attcaagcaggtcgtgaagtacgtatcatcgtacagcctgaaaaaatcgatgatctggca
tcacatcgtttagcgcgagatatccgcaaacgcattgaagaagaactcgattatccaggt
cacatcaaagtgacggttattcgtgaaacacgctctgtggagtatgcgaaataa
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