Solibacillus silvestris DSM 12223: SOLI23_04890
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Entry
SOLI23_04890 CDS
T04506
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOLI23_04890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssil03019
]
SOLI23_04890
03400 DNA repair and recombination proteins [BR:
ssil03400
]
SOLI23_04890
Enzymes [BR:
ssil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SOLI23_04890
Messenger RNA biogenesis [BR:
ssil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOLI23_04890
DNA repair and recombination proteins [BR:
ssil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SOLI23_04890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AMO84944
LinkDB
All DBs
Position
1031988..1033433
Genome browser
AA seq
481 aa
AA seq
DB search
MKLQSALKQYFGYDAFRPGQEEIIRNIMDGKDVVAILPTGMGKSLCYQLPGYLFEKPVLI
VSPLLSLMQDQVDQLKQMGEKRVVALNSFLTVDQKRYALHFLGEYRFIFASPEMLLQPQV
KARIQEMELSLIVADEAHCISQWGFDFRPDYLRIGEILSETNRPPILALSATATDTVLAD
IQSYLKMKSPFHYVHAVNRENIHLVKKLFSEREEKIEWIIEHVKNTAGPGIIYTQSRSKA
EAISLQLLQQNISAAAYHAGKEAQDRQFIQQQFLAGHLEWIVATNAFGMGVHKENVRQVI
HETMPATLSNYMQEIGRAGRDGKKAVAFLLYCEGDEQFAKFIASEDLPKNIHVDRFTEVM
ATGGQPQSLLANGEMSEVVFRVLSYWLARESAEEVKSRMMNLQIKKYEEVQLVLKLIKHS
DCMRKQVVQYFGQQLTKQQEYCCSNCGIEISELVEEREISKTMIKMTNWQHRLKKILLIN
S
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaaattacaaagtgccttaaagcaatatttcggatatgatgcattccggccagggcaa
gaagagattataagaaatattatggatggcaaagatgttgttgccattttaccgaccggc
atggggaagtctctatgttaccagctgccgggctatttatttgaaaaaccggtacttatt
gtgtcgccgcttttatcgctcatgcaagaccaggtggatcagctaaagcaaatgggggaa
aaacgggttgttgcattaaattcatttctaacggtggaccagaaaagatatgcacttcac
tttttgggcgagtaccggtttattttcgcttctcccgaaatgctattgcagcctcaagta
aaggcgcggattcaggagatggaactttcgttgattgttgcagatgaagcacattgtatt
tcacagtgggggtttgattttcgtccggactatttacggattggcgaaatattatcggaa
acgaaccgtccccctatactcgcgttatctgccacagcaacagataccgtattggcagat
attcaatcctatctgaaaatgaaatcaccttttcactacgtgcacgctgtaaacagggaa
aatattcatttagtaaaaaagttgttttcagagcgtgaagaaaagattgaatggattatt
gaacatgtgaaaaatacagccggtccaggcatcatttatacacaatcccgctcaaaagca
gaagcaatcagtttacagcttttacagcaaaatatttcagcggccgcttatcatgccggt
aaggaagcacaggaccgtcagtttatacagcaacaatttttagccggacatcttgaatgg
attgttgcgacaaatgcatttggtatgggtgtccataaagagaacgtccgtcaagtcatt
catgaaacaatgcctgcaacgttatcgaattatatgcaggaaattggccgggcgggtcga
gatggcaagaaagcagttgcttttttgttatattgtgagggagatgagcaatttgcaaag
tttattgcgtcagaagatttgccgaaaaatatacatgtagaccgatttactgaagtgatg
gccactgggggacagccgcagtcattgcttgcaaatggcgaaatgtcagaagtggtattc
cgtgtattaagttattggctggcacgtgaatcagctgaggaagtaaagagccggatgatg
aatttacagataaagaaatatgaagaagttcagctcgtattaaagcttattaaacattcg
gattgtatgcgtaagcaagtagttcaatactttggtcaacaattaacaaagcagcaggaa
tattgttgttccaactgcggaattgaaatttctgaacttgtggaagagagagagatttca
aaaactatgattaaaatgacaaattggcaacatcgcctcaagaaaatattgttaataaac
tcttaa
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