Solibacillus silvestris DSM 12223: SOLI23_12100
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Entry
SOLI23_12100 CDS
T04506
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOLI23_12100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssil03019
]
SOLI23_12100
03009 Ribosome biogenesis [BR:
ssil03009
]
SOLI23_12100
Enzymes [BR:
ssil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOLI23_12100
Messenger RNA biogenesis [BR:
ssil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOLI23_12100
Ribosome biogenesis [BR:
ssil03009
]
Prokaryotic type
rRNA helicases
SOLI23_12100
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
UvrD-helicase
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AMO86305
LinkDB
All DBs
Position
complement(2459019..2460464)
Genome browser
AA seq
481 aa
AA seq
DB search
MTTNFNEFPLSPELQNALKDLDYSTPTEVQQKVLPHALKEQDLIVKAQTGSGKTAAFAIP
ICENIEWIENKPQALVLTPTRELAVQVKEEFTNIGRYKRIKATALYGKQPFRYQQDELKQ
KTHIAVGTPGRVLDHIEKGTLKLDKIRYVVLDEADEMLNMGFIEQVEAILAHVEHREVMM
LFSATVPESIKKLASNYLNDPVDIEVQSEEAAPKIEHAVIEVQDEEKTAAVEKIAVVENP
DTCIIFCRTKDRVDALHDYLYDREYSVDKLHGGMDQSTRLLVMNDYKRGDFRYLVATDVA
ARGIDIENISLVINYDLPMEKEAYVHRTGRTGRAGKEGKAVTFVTPFEHDFLAGIEELIG
FTIPKVDLPTHEEVEAKAEAFDKKMQSRPQKKKQKNAKVDANITKLYFNGGKKKKLRAVD
FVGTIAKIPGMTAADIGIITILDTSTFVEILNGKGNLVLKAMKTTPIKGKQLKVHISTSN
N
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgacaactaattttaacgaatttccattatcaccagaattgcaaaatgcacttaaagat
ttagattacagtaccccaactgaagttcagcaaaaagtattgccccacgcattaaaagaa
caggatttaattgtgaaagcacaaacaggaagcggaaaaactgcagcattcgcaattccc
atttgtgaaaacattgaatggatcgaaaacaagccacaagcgctcgtattgaccccgaca
cgtgaattggctgttcaagtaaaagaggagtttaccaatattgggcgttataaacgtatt
aaagctactgcactttacggaaagcagccgttccgttatcaacaggacgaattaaagcaa
aaaacacatattgcagttggtacgccaggacgtgtgctggaccatatcgaaaagggaaca
ttgaagctcgataaaattcgctatgttgttcttgatgaagcagacgaaatgctcaacatg
ggctttatcgagcaagttgaagcgatattggcacatgtagaacatcgtgaagtaatgatg
ctgttttctgcgacagtaccagaatcgataaaaaaactggcttccaattacttaaatgat
ccggttgatatcgaagtacaatctgaagaggccgcgccaaaaattgaacatgccgttatt
gaagtgcaggatgaggaaaaaacagctgctgtcgaaaaaattgcagttgtggaaaatccg
gatacgtgcattattttctgtcgtacaaaagatcgggtcgatgcattgcatgattatttg
tatgaccgagagtacagtgtcgataagctgcacggcggcatggaccagtcaacacgctta
cttgtcatgaacgactacaagcgcggagatttccgttatttagtggcaacagatgttgcg
gcacgcggcattgatatcgagaatatttcgttagtgattaactatgatttaccgatggaa
aaagaagcgtatgtacatcgtaccggtcgaacaggacgtgccggcaaggaaggaaaagct
gttacgtttgtaacaccatttgaacatgattttcttgcggggattgaagaactgatcggc
tttacgattccgaaggtggatttgccgacacacgaggaagttgaggcaaaggcggaagcg
tttgacaaaaagatgcagagccgaccacaaaagaaaaaacaaaagaatgccaaagttgat
gcaaacattacgaagctttattttaatggcggtaagaagaaaaagctgcgtgctgttgat
tttgtcggaacaattgcaaagattccggggatgaccgccgctgatatcggcattattacg
atactggatacatctacattcgtagaaattctaaatggaaaaggaaatctcgtgttaaaa
gcgatgaaaacaacgcctattaagggcaagcaattaaaagtgcacatctcgacgagcaat
aactaa
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