Solibacillus silvestris DSM 12223: SOLI23_14750
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Entry
SOLI23_14750 CDS
T04506
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOLI23_14750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssil03019
]
SOLI23_14750
03016 Transfer RNA biogenesis [BR:
ssil03016
]
SOLI23_14750
Enzymes [BR:
ssil01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SOLI23_14750
Messenger RNA biogenesis [BR:
ssil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SOLI23_14750
Transfer RNA biogenesis [BR:
ssil03016
]
Prokaryotic type
tRNA degradation factors
SOLI23_14750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_Dis3
OB_HELZ2
S1_RRP5
CSD
GPIID_WHD
Motif
Other DBs
NCBI-ProteinID:
AMO86781
LinkDB
All DBs
Position
complement(2997858..3000266)
Genome browser
AA seq
802 aa
AA seq
DB search
MTQQNELQQRVLDMMKDDGYKPMTVSEIEDALELEEADDFRELVKTLVKMEAQGQIVRSR
SNRYGLPERMNLLRGRFIGNAKGFGFVAPEEQGMDDIFIPAHEVNGALNEDTVLVRVLKE
QSGDRREGTVVKIVERSKTSFVGTYQANRGFGFVVTDDKKLNMDIFIAKEDALGAVDGHK
VVVEVTHWPDATKSATGMITKILGHKNDPGVDILSILYKYDIPPEFPQEVVQAAIDVPDE
ITEQDLVGRRDLRNEVIVTIDGADAKDLDDAVTVVKNDNGTYKLGVHIADVSYYVTQGSV
LDQEAYERATSVYLTDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMTIDQAGHVVKHEIF
QSVIKTTERMTYSDVYNILENPDENPELMERYENLVPMFKDMADLAQILRNKRMARGAID
FDFKESKVLVNEDGWPTDIVLRERTVAERLIEEFMLAANETIAEHFHWMELPFIYRIHED
PKPEKLQRFFEFVTNFGIMIKGTGNSVHPKALQEVIRSIEGLPEEPVISTMLLRSMQQAK
YYAESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLVNGDTSKETVVQWSAVMDEIA
DHTSGRERRAVEAERDTDALKKAQFMSDKIGEEFEGIVSSITNFGIFVELENTVEGLVHI
SNMTDDYYRFEDRHMMMIGERTGRQFRIGDEVKIRVANVVIEESSVDFEIVDMVSSPRPA
RRQTSKVIHAGRREGRKKDDERTGEKRDRKSRGGSKERPEKAKRSGSSDRDPRGRRKEGK
SGDKPKFYEGIAKGKKKKSKKK
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgacacaacaaaatgaattacaacagcgcgttcttgatatgatgaaggacgatggctat
aaaccgatgaccgtatcggaaattgaagatgcactagaattagaagaagcggatgatttc
cgtgaattagtcaaaacactcgtaaaaatggaagcacagggacaaatcgtgcgctcccga
tcaaatcgctacggtttaccggaacgcatgaacttactgcgcggacgctttatcggtaac
gcgaaaggattcggtttcgtcgcaccggaagaacaaggcatggacgatattttcatcccg
gcacacgaagtcaatggtgcactcaatgaagataccgtgctcgtacgtgtattaaaggaa
caatcaggtgaccgccgtgaagggacggttgttaaaatcgtcgaacgcagcaaaacatca
tttgtcggtacataccaggcgaatcgcggttttggttttgtcgttacagatgataagaaa
ttgaatatggacatctttatcgcaaaagaggatgcactgggtgcggtcgacggacataaa
gtcgttgtagaagtaacgcactggccggatgcaacgaaatctgcgacagggatgatcacg
aaaattttaggtcataaaaatgatccgggtgtggacattttatcgatcctttataaatat
gatattccaccagaattcccgcaagaggttgtccaagcggcaatcgatgtaccggatgaa
attactgaacaggacttagtcggtcgtcgtgatctgcgcaatgaagttatcgtgactatc
gatggtgccgatgcgaaagacttggatgatgctgttaccgttgtaaaaaatgacaatggc
acatataagttaggcgtacacattgccgatgtcagctattatgtgacgcaaggctctgta
ctggatcaggaagcgtatgaacgcgcaacttctgtttatttgacggaccgcgtaattccg
atgattccgcatcgtttatcaaacgggatctgttcattgaatccacaagttgaccgttta
acattgtcatgtgaaatgacgattgaccaggctgggcacgttgtgaagcatgaaattttc
caaagtgtgattaaaacgacggagcgtatgacgtattcggacgtttataacattttagaa
aatccggacgaaaatccggaattaatggagcgctatgaaaatttagtgccgatgttcaaa
gatatggctgatttagcgcaaattctacgaaacaaacgtatggcgcgcggtgcgattgac
tttgatttcaaggaatcaaaagtattagtgaatgaagacggatggccgactgacatcgtg
ttacgcgaacgtacagttgcagagcgtctgattgaggagttcatgcttgcagcgaacgaa
acgattgccgagcatttccattggatggagctgccgttcatctaccgtatccacgaagat
ccgaagcctgaaaaattacaacgcttctttgaatttgttacaaattttggtattatgatc
aaaggtactggaaattcggtacatccgaaagcattgcaggaagtcattcgttcgatcgaa
ggcttacctgaagagccggttatttcaacgatgctgctacgttcgatgcagcaggcaaaa
tattatgctgagtcgttaggccacttcggtttatcgacagagttttatacgcacttcaca
tcaccgatccgtcgttacccggatttaatcgtccatcgtttaattcgtacgtatttagtg
aatggcgatacatcgaaggaaacggttgtacagtggagcgcggtaatggatgaaatcgcg
gaccatacatctggccgtgagcgtcgtgccgttgaagcagaacgtgatacagatgcactg
aaaaaagcgcagtttatgtccgataaaatcggggaagagttcgaagggatcgtgtcatcg
attacgaacttcggtattttcgtagagcttgaaaatacggtggaaggtcttgtgcatatt
tcgaatatgaccgacgactactaccgctttgaagaccgtcatatgatgatgatcggtgag
cgtactggccgccagttccgcatcggggatgaagtgaaaatccgtgtggcgaatgtcgta
attgaggaatcttcggtcgattttgaaatcgtcgatatggtaagcagtccacgtccggct
cgtcgtcaaacatcgaaagtgattcatgcaggtcgccgagaaggccgcaaaaaagatgat
gaacgtacaggcgaaaaacgtgaccgcaaatcacgtggtggaagcaaggaacgccctgaa
aaagcaaaacgttcaggctcgtctgaccgtgatccacgcggacgccgtaaagaaggtaaa
tcgggcgataagccgaagttttacgaaggcatcgcaaaaggcaaaaagaaaaaaagtaaa
aagaaatag
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