Solibacillus silvestris DSM 12223: SOLI23_16760
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Entry
SOLI23_16760 CDS
T04506
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SOLI23_16760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssil03019
]
SOLI23_16760
03009 Ribosome biogenesis [BR:
ssil03009
]
SOLI23_16760
Enzymes [BR:
ssil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SOLI23_16760
Messenger RNA biogenesis [BR:
ssil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SOLI23_16760
Ribosome biogenesis [BR:
ssil03009
]
Prokaryotic type
rRNA helicases
SOLI23_16760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
NDK
Motif
Other DBs
NCBI-ProteinID:
AMO87135
LinkDB
All DBs
Position
complement(3405221..3406774)
Genome browser
AA seq
517 aa
AA seq
DB search
MTNFSELNISESTLRSIKRMGFEEATPIQEGTVTFAMAGRDVLGQAQTGTGKTAAFGIPL
IEKIDPKNPNIQALVIAPTRELAIQVSEELYKLGYDKRVKLLSVYGGQEIGRQIRALKNK
PQIIVGTPGRIQDHINRRTLRLDEVQTLVLDEADEMLNMGFIDDINAILENVPSDRQTLL
FSATMPPAIRKIAETFMKDPEIVKIKAKELTMENIEQFFVKATEREKFDALSRLLDSQKP
ELAIIFGRTKRRVDELSQALGLRGFLAEGIHGDLSQAKRISVLRQFKEGKIDILIATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKSGVAVTFVTPREMGYLRIVEETTK
KRMTPLRPPSSEEALVGLQEDAMQSLVELVQNNDLGTYRELAAKLLENNDALDLVAAALK
SITKEPDATPVSLSEERPLPMRRDRSQGGGGRGRGGNDRNRGGGNRGGGDRRGGDRRREG
GGGGSRSGSGSRDGGRREGGARREGSRDRRPRPRRED
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaatttttcagaattaaacattagtgaatcgacattacgttctattaagcgtatg
gggtttgaagaagcaacaccaatccaagaaggaacagttacgtttgcaatggctggccgt
gatgttttaggccaagcacaaacaggtactggtaaaacagctgcatttggtattccttta
atcgagaaaatcgatccaaaaaatccaaatatccaagctttggtaattgctccgactcgc
gaattagcaatccaagtttcagaagaactttataaattaggttatgacaagcgcgtaaaa
ttattatcagtttacggaggtcaagaaattggccgtcaaatccgcgcattaaaaaacaaa
cctcaaattattgtaggtacaccaggtcgtattcaagaccatattaaccgtcgtacatta
cgtttagacgaagtgcaaactttagttttagacgaagcggacgaaatgttaaacatgggc
ttcatcgatgatattaatgcgattttagaaaacgtaccatcagatcgccaaacattacta
ttctcagcgacaatgcctccagcaatccgtaaaattgcagagacattcatgaaagatcct
gaaatcgtaaaaattaaagcgaaagaattaacaatggaaaacattgaacaattcttcgta
aaagcaacagagcgcgaaaaattcgatgctttatctcgtctattggattcacaaaaacca
gaattagcaattatcttcggtcgtacgaaacgccgtgttgatgagttaagccaagcttta
ggtttacgtggcttcttagcggaaggtatccacggtgatttatctcaagcaaaacgtatt
tctgttttacgtcagtttaaagaaggtaaaatcgatattttaatcgcaacagacgttgca
gctcgtggattggatatttcaggtgtaacgcatgtttacaactttgacattccacaagat
ccagaatcatacgttcaccgtatcggtcgtacaggccgtgcaggtaaatctggtgttgca
gtaactttcgtaacacctcgtgaaatgggttacttacgcatcgtagaagaaactacgaaa
aaacgtatgactcctttacgtccaccatcatctgaagaagcattagtaggcttacaagaa
gatgcaatgcaatcattggtggaattagttcaaaataatgatttaggtacttaccgtgag
ttagcagctaagttattggaaaataacgatgcacttgacttagtagcagctgctcttaaa
tcaattactaaagaacctgatgctacaccagtatcattatcggaagagcgtccattacca
atgcgtcgtgaccgttcacaaggtggcggaggccgtggccgtggcggtaatgaccgtaac
cgtggtggtggcaaccgtggcggtggtgaccgtcgcggaggagatcgccgtcgtgaaggt
ggcggaggcggaagccgttctggtagcggaagtcgtgatggaggtcgtcgtgaaggcggt
gctcgtcgcgaaggttctcgtgatcgtcgtccacgtccacgtcgtgaagactaa
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