Solibacillus silvestris DSM 12223: SOLI23_17775
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Entry
SOLI23_17775 CDS
T04506
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SOLI23_17775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssil03021
]
SOLI23_17775
03400 DNA repair and recombination proteins [BR:
ssil03400
]
SOLI23_17775
Enzymes [BR:
ssil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SOLI23_17775
Transcription machinery [BR:
ssil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SOLI23_17775
DNA repair and recombination proteins [BR:
ssil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SOLI23_17775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AMO87323
LinkDB
All DBs
Position
complement(3598519..3602199)
Genome browser
AA seq
1226 aa
AA seq
DB search
MIDVNEFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERQGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEEVIYFASYVVIEPGQTSLGYKDLLSEKEYRAYREKYGSEFEAAMGAEAIKRLLE
KIDLEDETQVLKEELKSAQGQRRTRAIKRLEVVESFRNSGNKPEWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERLHNEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGARGEGAVFNDSNEVLIAYQNGHVHLHSRIAIK
ASSLNNPTFTEEQNKMFLLSTVGKVIFNEILPRSFPYINEPTSVNLEQKTPEKYFVNLTI
DEELLKEIEATEGYADLSESEKIEAQRRAMLAKHFTNMPVVDPFRKKFLGNVIAEVFKEF
HITETSKMLDRMKNLGFKYSTRAGITVGVSDIVVLPDKGVILEEAQSKVDKVMIQFRRGL
ITEEERYNRVINVWTAAKDEIQGKLMKSLQKTNPIFMMSDSGARGNASNFTQLAGMRGLM
ANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDV
IVREDDCGTDRGLLIGSLMEGNELIEALDERIVGRYVKKTVRHPETGAVIVERDGLITQD
IARVIDDANIKEITIRSAFTCNTKHGVCKKCYGMNLATGEGVEVGEAVGIIAAQSIGEPG
TQLTMRTFHTGGVAGNDITQGLPRIQEIFEARNPKGQAVISEITGTVVEIEEIREGLKEV
TIQGDVETRKYQAPYNARLKVAEGDTIIAGQTLSEGSIDPKQLLKVKDVSTVQEYLLKEV
QKVYRMQGVEIGDKHIEVMVRQMLRKVRVIEAGDTELLPGSLLDIHQFSEANAEAVLSGK
TPATCRPVILGITKASLETESFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLV
PAGTGMQRYRQIRMEQEESAEVITAE
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgttaatgaatttgaatatatgaaaattggtttagcttcacctgacaagatc
cgttcttggtcatacggagaagtaaaaaaaccagaaacaattaactaccgtacattaaaa
ccagaaaaagatggtctattctgtgaacgtatttttggaccaactaaagactgggaatgt
cactgtggtaaatataagcgcgtacgttataaaggtgttgtttgtgaccgctgtggcgta
gaagtaacgcgttcgaaagttcgccgtgaacgccaaggacatatcgaactagcagcacct
gtatcacatatttggtacttcaaaggtattccaagccgtatgggtcttattttagatatg
tctccacgtgcattggaagaagtaatttactttgcttcatatgtagtaatcgagccaggt
caaacgtctttaggctataaagacttactttctgaaaaagaataccgtgcataccgtgaa
aagtatggcagtgaattcgaagcagcaatgggtgctgaagcgattaaacgtcttttagaa
aaaattgacttagaagatgaaacacaagttttaaaagaagagttaaaatctgcacaaggc
caacgccgtacacgtgcgattaaacgtttagaagtagtagagtcattccgtaactcaggc
aacaaaccagagtggatgattttagatgtactaccggtaattccaccagagcttcgtccg
atggtgcaattagatggtggacgttttgctacatctgacttaaatgacctttaccgtcgt
gttattaaccgtaacaaccgtttaaaacgtttacttgaccttggtgcaccaagcattatc
gttcaaaacgagaaacgtatgttacaagaagcggttgatgcattaatcgataatggtcgt
cgtggccgtcctgtaacaggtcctggtaaccgtcctttaaaatcactttcacatatgctg
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgtagactactctggt
cgttcggttatcgtagtaggtcctaacttaaaaatgtaccaatgtggtcttccaaaagaa
atggcaatcgaactgttcaaacctttcgtaatgaaagagttagtggaacgtggccttgcc
cataacatcaagagtgcaaaacgtaaaattgagcgtttacacaatgaagtttgggacgta
ttagaagatgtaattcgtgagcatccggtattacttaaccgtgcaccgacattacaccgt
cttggtatccaagcattcgagcctacactagtagaaggccgtgcaatccgtcttcaccca
ttagtatgtacagcttataacgctgacttcgatggtgaccaaatggcggttcacgttcca
ttatcagctgaggcacaagcagaagcccgtttacttatgttagcggcacaaaacatcctt
aacccgaaagacgggaaaccggtagtaactccatctcaggatatggtattaggtaactat
tacttaacacttgagcgtgaaggtgctcgtggtgaaggtgctgtatttaatgattcaaac
gaagtgttaatcgcctaccaaaacggtcatgtacatttacactctcgtattgcgattaaa
gcaagctcattaaataacccgacatttacagaagaacaaaataaaatgttcctattatcg
actgtaggtaaagtaatcttcaatgaaattttaccacgctcattcccttatattaatgag
ccgacttcagtcaacttagagcaaaaaacacctgaaaagtacttcgtgaacttaacaatt
gacgaagaattactgaaagaaatcgaagcaacagaaggctatgctgatttatctgaatca
gaaaaaattgaagcacaacgccgtgctatgttagcgaagcacttcacaaatatgcctgta
gtagatcctttccgtaaaaaattcttagggaatgttattgctgaagtatttaaagagttc
cacattacagaaacttctaagatgcttgaccgcatgaaaaacttaggtttcaaatattct
actcgtgcaggtattacagtaggtgtatctgacatcgtcgtattaccggataaaggcgta
atccttgaggaagcccaaagcaaagtagataaagtaatgatccagttccgccgtggttta
attactgaggaagagcgttataaccgagttattaacgtatggacagctgcgaaagatgaa
attcaaggcaagctgatgaaatctttacaaaaaactaacccgatcttcatgatgtctgac
tctggtgcccgtggtaacgcatcgaactttacacagttagctggtatgcgtggtctgatg
gccaacccggctggtcgtatcatcgagttaccaatcaagtcttcattccgtgaaggttta
acagtattagagtacttcatctctacacacggtgctcgtaaaggtcttgccgatacagca
ctaaaaactgccgactcaggttacttaactcgtcgtttagttgacgtagcacaagatgtt
atcgttcgtgaagacgactgtggtactgaccgcggtttattaatcggttcattaatggaa
ggaaacgaattgattgaagcgttagacgaacgtattgttggtcgttacgtgaagaaaaca
gttcgccatccagaaacaggagcggttatcgtagagcgtgatggtttaattacacaagat
attgctcgcgtaatcgatgatgcaaatatcaaagaaattacaatccgttctgcatttaca
tgtaatacaaaacacggtgtatgtaaaaaatgttacggtatgaacttagctactggtgaa
ggggtagaagttggtgaagcagttggtattattgctgcacaatctatcggtgaaccaggt
acacagttaacgatgcgtacattccatactggtggggtagccggaaacgatattacacaa
ggtcttccacgtatccaggaaattttcgaggcgcgtaaccctaaaggtcaagcagtcatt
tctgaaattactggtacagtagtagaaattgaagaaattcgtgaaggtcttaaagaagta
acaatccaaggtgatgtggaaacacgtaaataccaagcaccttataacgcgcgtctaaaa
gtagcagaaggcgacacaattatagcgggtcaaacattgtctgaaggttctatcgatccg
aagcaattattaaaagttaaagatgtatcgacagttcaagaatatttattaaaagaagta
cagaaagtataccgtatgcaaggggtagaaatcggagacaaacacatcgaagtaatggtt
cgccaaatgcttcgtaaagtgcgtgtgattgaagcaggtgacactgagttattaccaggt
tcacttcttgatattcaccaattctctgaggcgaatgctgaagccgtacttagcggtaaa
acaccagcaacttgccgtcctgtcattttaggtattacaaaagcttctcttgaaacagaa
tcattcttatcagctgcatcattccaagaaacaacacgtgtgttaacggatgctgcaatt
aaaggtaaacgtgatgagcttctaggtctgaaggaaaacgtaattatcggtaaactagtt
ccggctggtactggtatgcaacgttaccgtcaaatccgtatggagcaagaagaatcagca
gaagtaattacagctgaatag
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